hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14425364/chunk_1/iprscan-20080502-14425364.nocrc
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Query sequence: KIAA0845
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00038.11.ls Intermediate filament protein                  495.9   4.3e-146   1
PF00038.11.fs Intermediate filament protein                  494.0   1.7e-145   1
PF07142.3.ls Repeat of unknown function (DUF1388)           157.5    3.2e-44   9
PF07142.3.fs Repeat of unknown function (DUF1388)           144.3      3e-40   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00038.11.fs   1/1     104   420 ..     1   355 []   494.0 1.7e-145
PF00038.11.ls   1/1     104   420 ..     1   355 []   495.9 4.3e-146
PF07142.3.fs   2/9     549   579 ..     1    29 []    20.5    5e-05
PF07142.3.ls   3/9     583   613 ..     1    29 []    28.6  2.1e-05
PF07142.3.fs   3/9     583   613 ..     1    29 []    26.6    1e-06
PF07142.3.ls   4/9     618   647 ..     1    29 []    25.2  0.00022
PF07142.3.fs   4/9     618   647 ..     1    29 []    24.2  4.7e-06

Alignments of top-scoring domains:
PF00038.11.fs: domain 1 of 1, from 104 to 420: score 494.0, E = 1.7e-145
                   *->nEKeemQnLNDRLASYIDKVRfLEqqNkeLeakieelrqktksaeps
                      +EKe++Q LNDR+A+YIDKVR+LE++N+ Le++ ++lrq+  +a++s
    KIAA0845   104    SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQ--QAGRS 148  

                   rlyslYeqeireLRrqldeltnerarlqleidnlrlaaedfrkKyEdEen
                    +++lYe+e re+R+ ++ l++ r++l le ++l ++++++r+++ dE  
    KIAA0845   149 AMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDE-- 196  

                   DLaAqgrLkdLeallnskEAeLatalnlRqeaEndingLRaQiAlEslaA
                                             ++R+eaE+  ++L           
    KIAA0845   197 -------------------------ARQREEAEAAARALA---------- 211  

                   kkdlDeatLarvDLErkiESLqEElaFLKknHEEElreLqaqvq.d....
                    +  +ea +arvDL++k+++LqEE+ +L+ +H+EE+ eL +q+q+++  +
    KIAA0845   212 -RFAQEAEAARVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQgSgaaq 260  

                   gqvnVEmDaarkpDfEKLtkaLaEiRaQYEelAekNrqeaEewYksKlee
                    q++ E  +a k+D    t+aL+EiRaQ E +A ++  ++Eew++ +l  
    KIAA0845   261 AQMQAETRDALKCD---VTSALREIRAQLEGHAVQSTLQSEEWFRVRLDR 307  

                   LqqaaarngealrsaKeEitElRRqiQsLeiELqslkkqkesLErqlaEl
                   L++aa+ n++a+rsa+eEitE+RRq+Q+++ EL++lk++k+sLErq +El
    KIAA0845   308 LSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSEL 357  

                   EeryeaelaqyQdtiseLEeeLqqlkeeMaRQLrEYQeLLdVKlALDiEI
                   E+r++a++a yQ+ i++L++eL+++k+eMa QLrEYQ+LL+VK+ALDiEI
    KIAA0845   358 EDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEI 407  

                   ATYRKLLEGEEsR<-*
                   A+YRKLLEGEE+R   
    KIAA0845   408 AAYRKLLEGEECR    420  

PF00038.11.ls: domain 1 of 1, from 104 to 420: score 495.9, E = 4.3e-146
                   *->nEKeemQnLNDRLASYIDKVRfLEqqNkeLeakieelrqktksaeps
                      +EKe++Q LNDR+A+YIDKVR+LE++N+ Le++ ++lrq+  +a++s
    KIAA0845   104    SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQ--QAGRS 148  

                   rlyslYeqeireLRrqldeltnerarlqleidnlrlaaedfrkKyEdEen
                    +++lYe+e re+R+ ++ l++ r++l le ++l ++++++r+++ dE  
    KIAA0845   149 AMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDE-- 196  

                   DLaAqgrLkdLeallnskEAeLatalnlRqeaEndingLRaQiAlEslaA
                                             ++R+eaE+  ++L           
    KIAA0845   197 -------------------------ARQREEAEAAARALA---------- 211  

                   kkdlDeatLarvDLErkiESLqEElaFLKknHEEElreLqaqvq.d....
                    +  +ea +arvDL++k+++LqEE+ +L+ +H+EE+ eL +q+q+++  +
    KIAA0845   212 -RFAQEAEAARVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQgSgaaq 260  

                   gqvnVEmDaarkpDfEKLtkaLaEiRaQYEelAekNrqeaEewYksKlee
                    q++ E  +a k+D    t+aL+EiRaQ E +A ++  ++Eew++ +l  
    KIAA0845   261 AQMQAETRDALKCD---VTSALREIRAQLEGHAVQSTLQSEEWFRVRLDR 307  

                   LqqaaarngealrsaKeEitElRRqiQsLeiELqslkkqkesLErqlaEl
                   L++aa+ n++a+rsa+eEitE+RRq+Q+++ EL++lk++k+sLErq +El
    KIAA0845   308 LSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSEL 357  

                   EeryeaelaqyQdtiseLEeeLqqlkeeMaRQLrEYQeLLdVKlALDiEI
                   E+r++a++a yQ+ i++L++eL+++k+eMa QLrEYQ+LL+VK+ALDiEI
    KIAA0845   358 EDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEI 407  

                   ATYRKLLEGEEsR<-*
                   A+YRKLLEGEE+R   
    KIAA0845   408 AAYRKLLEGEECR    420  

PF07142.3.fs: domain 2 of 9, from 549 to 579: score 20.5, E = 5e-05
                   *->PaenKsPgenKsP..genKsPgEnKsPaeak<-*
                      Pae+KsP+++KsP ++e+KsP E+KsP++++   
    KIAA0845   549    PAEVKSPEKAKSPakEEAKSPPEAKSPEKEE    579  

PF07142.3.ls: domain 3 of 9, from 583 to 613: score 28.6, E = 2.1e-05
                   *->PaenKsPgenKsP..genKsPgEnKsPaeak<-*
                      Pae+KsP+++KsP ++e+KsP+E+KsP++ak   
    KIAA0845   583    PAEVKSPEKAKSPakEEAKSPAEAKSPEKAK    613  

PF07142.3.fs: domain 3 of 9, from 583 to 613: score 26.6, E = 1e-06
                   *->PaenKsPgenKsP..genKsPgEnKsPaeak<-*
                      Pae+KsP+++KsP ++e+KsP+E+KsP++ak   
    KIAA0845   583    PAEVKSPEKAKSPakEEAKSPAEAKSPEKAK    613  

PF07142.3.ls: domain 4 of 9, from 618 to 647: score 25.2, E = 0.00022
                   *->PaenKsPgenKsP..genKsPgEnKsPaeak<-*
                       +e+KsP+e+KsP ++e+KsP+E+KsP++ak   
    KIAA0845   618    -EEAKSPAEAKSPvkEEAKSPAEVKSPEKAK    647  

PF07142.3.fs: domain 4 of 9, from 618 to 647: score 24.2, E = 4.7e-06
                   *->PaenKsPgenKsP..genKsPgEnKsPaeak<-*
                       +e+KsP+e+KsP ++e+KsP+E+KsP++ak   
    KIAA0845   618    -EEAKSPAEAKSPvkEEAKSPAEVKSPEKAK    647  

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