hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07082393/chunk_1/iprscan-20080502-07082393.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1589 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00064 114.4 1.3e-29 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00064 1/2 629 699 .. 1 81 [] 56.3 3.8e-12 SM00064 2/2 746 815 .. 1 81 [] 58.1 1.2e-12 Alignments of top-scoring domains: SM00064: domain 1 of 2, from 629 to 699: score 56.3, E = 3.8e-12 *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk ++W p + +C +C ++F + +HHCR+CG fC++Cssk KIAA1589 629 IAPAYWRPNSQILSC-NKCATSFKD-NDTKHHCRACGEGFCDSCSSK 673 kaplpklgkekkngknedftpvRVCdsCyerlsk<-* + p+p g + pvRVCd Cye ++ KIAA1589 674 TRPVPERGWG--------PAPVRVCDNCYEARNV 699 SM00064: domain 2 of 2, from 746 to 815: score 58.1, E = 1.2e-12 *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk + ++WvpD+e +C +nC+keF++ +HHCR+CG+ fC+ Cs+ KIAA1589 746 ARPAYWVPDHEILHC-HNCRKEFSI-KLSKHHCRACGQGFCDECSHD 790 kaplpklgkekkngknedftpvRVCdsCyerlsk<-* + +p+ g pvRVC C+ + KIAA1589 791 RRAVPSRGWDH---------PVRVCFNCNKKPGD 815 //