Gene/Protein Characteristic Table for KIAA0908
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Product ID ORK00680
Accession No AB020715
Description prenylcysteine oxidase 1
Clone name hk10449
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4226 bp)
Predicted protein sequence (506 aa)
Flexi ORF Clone FXC00680
Source Human adult brain
Rouge ID mKIAA0908 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4226 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 2 f 70338797 70360734 6 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 506 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG09897 4.3e-212 100.0 prenylcysteine ...
synthetic construct
Q9UHG3 2.3e-211 99.8 Prenylcysteine ...
Homo sapiens
AAF16937 5.7e-211 99.6 prenylcysteine ...
Homo sapiens
Q5R748 1.6e-208 98.8 Prenylcysteine ...
Pongo abelii
Q95KC9 5.4e-208 98.0 Prenylcysteine ...
Macaca fascicularis
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013027 37 74 PF07992 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
IPR010795 129 506 PF07156 Prenylcysteine lyase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 4 RVVAELVSSLLGLWLLLCSCGCP 26 PRIMARY 23
2 36 DKIAIIGAGIGGTSAAYYLR 55 SECONDARY 20
3 130 EESNWFIINVIKLVWRYGFQFLR 152 SECONDARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GGGAAAGATGTGAAGATAGAC
Primer_r TAAAGGATGGATGACAGAACC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 2
Experimental conditions
Panel name GeneBridge 4
Primer_f GGGAAAGATGTGAAGATAGAC
Primer_r TAAAGGATGGATGACAGAACC
PCR product length 114 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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