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Order Kazusa clone(s) from : |
| Product ID | ORK06735 |
|---|---|
| Accession No | AB067492 |
| Description | scinderin |
| Clone name | ag00008 |
| Vector information | |
| cDNA sequence | DNA sequence (2570 bp) Predicted protein sequence (626 aa) |
| Source | Human brain (amygdala) |
| Rouge ID |
mKIAA1905
by Kazusa Mouse cDNA Project
|
Length: 2570 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | No warning | Warning |
Ensembl ContigView (Add our DAS server as a DAS source)
| Chr | f/r | start | end | exon | identity | class | |
|---|---|---|---|---|---|---|---|
|
| 7 | f | 12576728 | 12659254 | 15 | 99.8 | Perfect prediction |
Length: 626 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)![]() |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment)
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR007122 | 372 | 393 | PR00597 | Gelsolin |
| IPR007122 | 461 | 477 | PR00597 | Gelsolin | |
| IPR007122 | 482 | 500 | PR00597 | Gelsolin | |
| IPR007122 | 515 | 535 | PR00597 | Gelsolin | |
| HMMPfam | IPR007123 | 72 | 154 | PF00626 | Gelsolin region |
| IPR007123 | 192 | 267 | PF00626 | Gelsolin region | |
| IPR007123 | 309 | 387 | PF00626 | Gelsolin region | |
| IPR007123 | 451 | 529 | PF00626 | Gelsolin region | |
| HMMSmart | IPR007122 | 63 | 160 | SM00262 | Gelsolin |
| IPR007122 | 181 | 273 | SM00262 | Gelsolin | |
| IPR007122 | 298 | 393 | SM00262 | Gelsolin | |
| IPR007122 | 442 | 535 | SM00262 | Gelsolin |
RT-PCR-ELISA
|
Experimental conditions| Primer_f | CTGGAGGATTGAGAAGCTGGA |
|---|---|
| Primer_r | AAGTGCAGGTGGTAGGTGAAG |
| PCR conditions | 95 °C 30 sec 55 °C 30 sec 72 °C 60 sec 30 cycles![]() |
Chromosome No. 7
Experimental conditions| Panel name | genbank |
|---|---|
| Primer_f | - |
| Primer_r | - |
| PCR product length | - |
| PCR conditions | - |