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Gene/Protein Characteristic Table for FLJ00055

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Product ID	ORK05053
Accession No	AK024462
Clone name	as00055
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4521 bp) Predicted protein sequence (977 aa)
Source	Human spleen
Rouge ID	mFLJ00055 by Kazusa Mouse cDNA Project

Length: 4521 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 977 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007110	177	230	PF00047	Immunoglobulin-like
	IPR007110	266	337	PF00047	Immunoglobulin-like
	IPR007110	368	419	PF00047	Immunoglobulin-like
	IPR007110	454	511	PF00047	Immunoglobulin-like
	IPR007110	542	594	PF00047	Immunoglobulin-like
	IPR007110	628	695	PF00047	Immunoglobulin-like
HMMSmart	IPR003599	70	160	SM00409	Immunoglobulin subtype
	IPR003598	76	151	SM00408	Immunoglobulin C-2 type
	IPR003599	169	249	SM00409	Immunoglobulin subtype
	IPR003598	175	235	SM00408	Immunoglobulin C-2 type
	IPR003599	258	353	SM00409	Immunoglobulin subtype
	IPR003598	264	342	SM00408	Immunoglobulin C-2 type
	IPR003599	360	437	SM00409	Immunoglobulin subtype
	IPR003599	446	527	SM00409	Immunoglobulin subtype
	IPR003598	452	516	SM00408	Immunoglobulin C-2 type
	IPR003599	534	611	SM00409	Immunoglobulin subtype
	IPR003598	540	599	SM00408	Immunoglobulin C-2 type
	IPR003599	620	711	SM00409	Immunoglobulin subtype
	IPR003598	626	700	SM00408	Immunoglobulin C-2 type
	IPR003599	718	798	SM00409	Immunoglobulin subtype
	IPR003598	724	786	SM00408	Immunoglobulin C-2 type
	IPR003599	804	899	SM00409	Immunoglobulin subtype
	IPR003598	813	888	SM00408	Immunoglobulin C-2 type
ProfileScan	IPR007110	67	162	PS50835	Immunoglobulin-like
	IPR007110	166	245	PS50835	Immunoglobulin-like
	IPR007110	252	356	PS50835	Immunoglobulin-like
	IPR007110	353	433	PS50835	Immunoglobulin-like
	IPR007110	440	527	PS50835	Immunoglobulin-like
	IPR007110	527	609	PS50835	Immunoglobulin-like
	IPR007110	713	796	PS50835	Immunoglobulin-like
	IPR007110	804	899	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	908	QQLLWVLGLLVGLLLLLLGLGA	929	PRIMARY	22

Experimental conditions

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