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Gene/Protein Characteristic Table for FLJ00080

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Product ID	ORK06648
Accession No	AK074034
Clone name	as00080
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4539 bp) Predicted protein sequence (716 aa)
Source	Human spleen
Rouge ID	mFLJ00080 by Kazusa Mouse cDNA Project

Length: 4539 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 716 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002610	595	715	PF01694	Rhomboid-like protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	352	YWLTFVHVIITLLVICTYGIAPV	374	PRIMARY	23
	2	603	LWLSLFLHAGVVHCLVSVVFQMT	625	PRIMARY	23
	3	635	GWHRIAIIFILSGITGNLASAIF	657	SECONDARY	23

Experimental conditions

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