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Gene/Protein Characteristic Table for FLJ00100

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Product ID	ORK05076
Accession No	AK024494
Clone name	as00100
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4434 bp) Predicted protein sequence (672 aa)
Source	Human spleen

Length: 4434 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 672 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004841	1	294	PF00324	Amino acid permease-associated region
ProfileScan	IPR002293	25	195	PS50285	Amino acid/polyamine transporter I

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	22	VMNFASVFAVLFNGCTGIMAGAN	44	SECONDARY	23
	2	58	LGTIVAVAYTFFVYVLLFFLSSF	80	PRIMARY	23
	3	99	LWPPLVLIGIYATALSASMSSLI	121	SECONDARY	23
	4	150	GNPWAAVLYSWGLVQLVLLAGKL	172	SECONDARY	23
	5	178	VVTVFYLVAYAAVDLSCLSLEWA	200	PRIMARY	23
	6	223	SCLLMMFLISPGAAGGSLLLMGL	245	PRIMARY	23

Experimental conditions

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