Gene/Protein Characteristic Table for KIAA1326
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Product ID ORK06287
Accession No AB037747
Description protocadherin 11 X-linked
Clone name fh14376
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5563 bp)
Predicted protein sequence (424 aa)
Source Human fetal brain
Features of the cloned cDNA sequence
Description

Length: 5563 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 4287 bp
Genome contig ID gi89161218f_90920664
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
CTTATTAATATATATTAATAAAAGTTATGAGAAAT
Flanking genome sequence
(844220 - 844269)
----+----*----+----*----+----*----+----*----+----*
AAACATTCATTGTTATTGTGTGTGTTAATTCAAAACTCAAATGATTCACT
Features of the protein sequence
Description

Length: 424 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9BZA7 3.2e-161 100.0 Protocadherin-1...
Homo sapiens
AAK82655 3.2e-161 100.0 protocadherin-S...
Homo sapiens
Q71M42 1.4e-160 99.5 Protocadherin-1...
Pan troglodytes
Q6WYY1 3.2e-160 99.3 Protocadherin-1...
Pan paniscus
Q6X862 6.1e-159 99.1 Protocadherin-1...
Gorilla gorilla...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013585 1 78 PF08374 Protocadherin
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TAGACAGTGGTATAGGTTGAC
Primer_r GATTGTTGGTTCAGTAAGACG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 14
Experimental conditions
Panel name GeneBridge 4
Primer_f TAGACAGTGGTATAGGTTGAC
Primer_r GATTGTTGGTTCAGTAAGACG
PCR product length 98 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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