KIAA1738

Product ID	ORK01179
Accession No	AB051525
Description	testis expressed 2, transcript variant 2
Clone name	pj00192s1
Vector information	The cDNA fragment was inserted at the SalI-SacI site of of t ... The cDNA fragment was inserted at the SalI-SacI site of of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The adjacent sequence to the 5'/3' end of the cDNA is as follows: 5'-end: GGGCCCCCCC TCGAGGTCGA CCCACGCGTC CG-5' end of cDNA 3'-end: GAGCTCTCAC CACTTTGTAC AAGAAAGCTG GGCGGCCGTT TTTTTTTTTT TTTTTT-3' end of cDNA
cDNA sequence	DNA sequence (4914 bp) Predicted protein sequence (1127 aa)
HaloTag ORF Clone	FHC01179
Flexi ORF Clone	FXC01179
Source	Human brain (hippocampus)
Rouge ID	mKIAA1738 by Kazusa Mouse cDNA Project
Note	We replaced pj00192, former representative clones for KIAA1738 with pj00192s1. (2001/2/07)

Length: 4914 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis).

	N-terminal truncation	Coding interruption
cloned DNA seq	Warning	No warning

Integrity of 3' end

Length of 3'UTR	1530 bp
Genome contig ID	gi51511734r_59478531
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- CATTGTTTCACAAAATAAATATCTCAATGTCAAAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTAGATAAGCATCTAAGTCATTTCTACGGAATCCTGTTCAGATAGGGGC

Ensembl ContigView (Add our DAS server as a DAS source)

	Chr	f/r	start	end	exon	identity	class
Ensembl gnome browser	17	r	59578531	59645309	11	99.7	Perfect prediction

Length: 1127 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
ACE87831	99.9	testis expresse...	synthetic construct
EAW94210	99.4	testis expresse...	Homo sapiens
XP_001160311	99.6	testis expresse...	Pan troglodytes
CAD38927	99.6	hypothetical pr...	Homo sapiens
AAH40521	99.2	Testis expresse...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR002114	269	284	PS00589	Phosphotransferase system

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	469	PELPVKTLGFFIMCVYVYLILPL	491	PRIMARY	23
SOSUI2	2	497	GLFLGIGLGFMTAVCVIWFFTP	518	PRIMARY	22

Primer_f	GTGTGGACAAAGCTAATAGTG
Primer_r	GCCTACACAACGAAAAATCAG
PCR conditions	95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Panel name	unigene
Primer_f	-
Primer_r	-
PCR product length	-
PCR conditions	-