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Gene/Protein Characteristic Table for FLJ00344

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Product ID	ORK07004
Accession No	AK160380
Clone name	sf00013
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (8069 bp) Predicted protein sequence (1055 aa)
Source	Human spleen
Rouge ID	mFLJ00344 by Kazusa Mouse cDNA Project

Length: 8069 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1055 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006209	173	208	PF00008	EGF-like domain
	IPR006209	304	341	PF00008	EGF-like domain
	IPR006209	390	426	PF00008	EGF-like domain
	IPR000782	439	562	PF02469	Beta-Ig-H3/fasciclin
	IPR000782	582	700	PF02469	Beta-Ig-H3/fasciclin
	IPR006209	781	816	PF00008	EGF-like domain
HMMSmart	IPR006210	169	209	SM00181	Type I EGF
	IPR006210	220	257	SM00181	Type I EGF
	IPR006210	262	299	SM00181	Type I EGF
	IPR006210	303	342	SM00181	Type I EGF
	IPR006210	346	385	SM00181	Type I EGF
	IPR006210	389	427	SM00181	Type I EGF
	IPR006210	780	817	SM00181	Type I EGF
	IPR006210	827	861	SM00181	Type I EGF
	IPR006210	868	903	SM00181	Type I EGF
	IPR006210	907	945	SM00181	Type I EGF
	IPR006210	949	987	SM00181	Type I EGF
ProfileScan	NULL	148	415	PS50311	NULL
	IPR000782	427	560	PS50213	Beta-Ig-H3/fasciclin
	IPR000782	570	698	PS50213	Beta-Ig-H3/fasciclin
	NULL	756	1017	PS50311	NULL
ScanRegExp	IPR006209	197	208	PS00022	EGF-like domain
	IPR006209	197	211	PS01186	EGF-like domain
	IPR006209	285	298	PS01186	EGF-like domain
	IPR006209	328	341	PS01186	EGF-like domain
	IPR006209	371	384	PS01186	EGF-like domain
	IPR006209	413	426	PS01186	EGF-like domain
	IPR006209	805	816	PS00022	EGF-like domain
	IPR006209	805	819	PS01186	EGF-like domain
	IPR002049	805	839	PS01248	Laminin-type EGF-like domain
	IPR006209	849	860	PS00022	EGF-like domain
	IPR006209	849	860	PS01186	EGF-like domain
	IPR006209	889	902	PS01186	EGF-like domain
	IPR006209	931	944	PS01186	EGF-like domain

Experimental conditions

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