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Gene/Protein Characteristic Table for FLJ00285

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Product ID	ORK05148
Accession No	AK131084
Clone name	sh02320
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5537 bp) Predicted protein sequence (829 aa)
Source	Human spleen
Rouge ID	mFLJ00285 by Kazusa Mouse cDNA Project

Length: 5537 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 829 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000203	198	247	PF01825	GPS domain
	IPR001024	305	419	PF01477	Lipoxygenase
	IPR009443	600	829	PF06409	Nuclear pore complex interacting
HMMSmart	IPR000203	198	247	SM00303	GPS domain
	IPR001024	305	418	SM00308	Lipoxygenase
ProfileScan	IPR000203	199	248	PS50221	GPS domain
	IPR001024	319	406	PS50095	Lipoxygenase
ScanRegExp	IPR010916	1	89	PS00430	TONB Box N terminus

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	260	VNYIVMLTCAVCLVTYMVMAAIL	282	PRIMARY	23
	2	463	RIQRATCCVLLICLFLGANAVWY	485	PRIMARY	23
	3	508	TVAVGLVSSVVVYPVYLAILFLF	530	PRIMARY	23

Experimental conditions

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