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Gene/Protein Characteristic Table for FLJ00164

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Product ID	ORK06820
Accession No	AK074093
Clone name	sh07138
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5829 bp) Predicted protein sequence (822 aa)
Source	Human spleen
Rouge ID	mFLJ00164 by Kazusa Mouse cDNA Project

Length: 5829 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 822 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001452	46	104	PF00018	SH3
	NULL	47	104	PF07653	NULL
	IPR001440	298	331	PF00515	TPR repeat
	IPR001440	403	436	PF00515	TPR repeat
	IPR001440	601	634	PF00515	TPR repeat
HMMSmart	IPR001452	46	105	SM00326	SH3
	IPR001440	298	331	SM00028	TPR repeat
	IPR001440	339	372	SM00028	TPR repeat
	IPR001440	403	436	SM00028	TPR repeat
	IPR001440	601	634	SM00028	TPR repeat
	IPR001440	641	674	SM00028	TPR repeat
ProfileScan	IPR001452	43	106	PS50002	SH3

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	291	AGLLMALARLCFLLGRLCS	309	SECONDARY	19
	2	328	LEGSFGDLFLVVAVYANLASIY	349	PRIMARY	22

Experimental conditions

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