• NEDO
  Top page Gene List

Gene/Protein Characteristic Table for FLJ00382

Order Kazusa clone(s) from : Japan || Other countries

Product ID	ORK05182
Accession No	AK090461
Clone name	sj02645
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4274 bp) Predicted protein sequence (482 aa)
Source	Human spleen

Length: 4274 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 482 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	NULL	98	179	PF07654	NULL
	IPR007110	104	169	PF00047	Immunoglobulin-like
	NULL	256	343	PF07654	NULL
	IPR007110	266	334	PF00047	Immunoglobulin-like
	NULL	365	450	PF07654	NULL
	IPR007110	370	440	PF00047	Immunoglobulin-like
HMMSmart	IPR003597	106	177	SM00407	Immunoglobulin C-type
	IPR003597	268	342	SM00407	Immunoglobulin C-type
	IPR003597	372	448	SM00407	Immunoglobulin C-type
ProfileScan	NULL	57	69	PS50328	NULL
	IPR007110	89	181	PS50835	Immunoglobulin-like
	IPR007110	258	359	PS50835	Immunoglobulin-like
	IPR007110	350	456	PS50835	Immunoglobulin-like
ScanRegExp	IPR003006	165	171	PS00290	Immunoglobulin/major histocompatibility complex
	IPR003006	436	442	PS00290	Immunoglobulin/major histocompatibility complex

Experimental conditions

Order Kazusa clone(s) from : Japan || Other countries
Back to the NEDO Protein Database homepage
Send a message to office AT kazusa.or.jp