HUGE

Gene/Protein Characteristic Table for KIAA0022

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00368
Accession No. :	D14664
Description :	CD302 antigen precursor.
HUGO Gene Name :	CD302 molecule (CD302)
Clone Name :	ha00480 [Vector Info]
Flexi ORF Clone :	pF1KSDA0022
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 3694 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2997 bp

Genome contig ID gi89161199r_160233610
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TAAATTTTTTAAATAAAGTTTTATGGGTTAAGCAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGACAACTGTCATACTGAATTTTATTAAAAGTATATATACTTCAAATTC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 r 160333610 160362953 6 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 231 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8IX05	7.7e-103	100.0	CD302 antigen; ...	Homo sapiens
BAF83968	1.3e-102	99.6	unnamed protein...	Homo sapiens
AAP79899	2.4e-94	97.7	DEC-205/DCL-1 f...	Homo sapiens
EAX11395	2.4e-94	97.7	hCG2045884, iso...	Homo sapiens
XP_001148026	1.1e-93	96.8	lymphocyte anti...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014609	8.5e-12	24.2	KIAA0709

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001304 44 154 PF00059 C-type lectin

HMMSmart IPR001304 23 153 SM00034 C-type lectin

ProfileScan IPR001304 31 143 PS50041 C-type lectin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001304	44	154	PF00059	C-type lectin
HMMSmart	IPR001304	23	153	SM00034	C-type lectin
ProfileScan	IPR001304	31	143	PS50041	C-type lectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 2 RAALPALLLPLLGLAAAAVADCP 24 PRIMARY 23

2 168 ILISALVIASTVILTVLGAIIWF 190 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	2	RAALPALLLPLLGLAAAAVADCP	24	PRIMARY	23
2	168	ILISALVIASTVILTVLGAIIWF	190	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CAGGCAGGCTTGTTTACTAC
Primer_r	: GCTTTCATTGGTTATCAGTT
PCR product length	: 201 bp
PCR conditions	: 95 °C15 sec58 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2997 bp
Genome contig ID	gi89161199r_160233610
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- TAAATTTTTTAAATAAAGTTTTATGGGTTAAGCAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGACAACTGTCATACTGAATTTTATTAAAAGTATATATACTTCAAATTC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	r	160333610	160362953	6	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0022

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information