HUGE

Gene/Protein Characteristic Table for KIAA0081

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00399
Accession No. :	D42039
Description :	Mesoderm development candidate 2.
HUGO Gene Name :	mesoderm development candidate 2 (MESDC2)
Clone Name :	ha01009s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA0081
Source :	Myeloblast cell line (KG-1)
Note :	We replaced ha01009, former representative clones for KIAA0081 with ha01009s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4174 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3466 bp

Genome contig ID gi51511731r_78955150
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
GATCTAATAAATTTGGATGATATCTTTTGACTATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATTATGAAACCTGTATCAGATATACACATCTTTCCTTCTTCATCCTCAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 r 79055150 79069190 3 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 235 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q14696	3.7e-89	100.0	Mesoderm develo...	Homo sapiens
BAE87150	5.3e-86	97.0	unnamed protein...	Macaca fascicularis
XP_001928898	2.6e-77	88.0	similar to Meso...	Sus scrofa
Q3T0U1	4.5e-76	86.8	Mesoderm develo...	Bos taurus
BAC27617	2.5e-67	83.8	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 11 AVVLLCASDLLLLLLLLPPPG 31 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	11	AVVLLCASDLLLLLLLLPPPG	31	PRIMARY	21

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: ACTGAGGGGAGCCAACATAAG
Primer_r	: TTAGTAGAGACAGGGCTTCAC
PCR product length	: 198 bp
PCR conditions	: 95 °C15 sec62 °C120 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3466 bp
Genome contig ID	gi51511731r_78955150
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- GATCTAATAAATTTGGATGATATCTTTTGACTATC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATTATGAAACCTGTATCAGATATACACATCTTTCCTTCTTCATCCTCAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	r	79055150	79069190	3	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0081

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information