HUGE

Gene/Protein Characteristic Table for KIAA0206

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05824
Accession No. :	D86961
Description :	Lipoma HMGIC fusion partner-like 2 protein.
HUGO Gene Name :	lipoma HMGIC fusion partner-like 2 (LHFPL2)
Clone Name :	ha04806 [Vector Info]
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 4249 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3667 bp

Genome contig ID gi51511721r_77716810
PolyA signal sequence
(ATTAAA,-22)
+----*----+----*----+----*----+----
TCCCCAGATCTTAATTAAACCAGATTTTGCAATTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCTTATTCTTTCAAGTCTGAGTATACTGGCTTCAATATGATGTGTATA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 r 77816810 77841687 2 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 193 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q6ZUX7	5e-80	100.0	Lipoma HMGIC fu...	Homo sapiens
BAC86089	5e-80	100.0	unnamed protein...	Homo sapiens
XP_001108010	2e-79	99.0	similar to lipo...	Macaca mulatta
AAI42331	1.8e-73	92.7	LHFPL2 protein ...	Bos taurus
XP_001517941	4e-65	83.9	similar to HMGI...	Ornithorhynchus...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 66 AIFLAVGIFILCMVALVSVFTMC 88 PRIMARY 23

2 100 VCGLLQGIAGLFLILGLILYPAG 122 PRIMARY 23

3 147 GWAFYTAIGGTVLTFICAVFSAQ 169 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	66	AIFLAVGIFILCMVALVSVFTMC	88	PRIMARY	23
2	100	VCGLLQGIAGLFLILGLILYPAG	122	PRIMARY	23
3	147	GWAFYTAIGGTVLTFICAVFSAQ	169	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: ACTCGGCACCACTTGATATTC
Primer_r	: TGCACAGGAACCAAATCAATG
PCR product length	: 150 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3667 bp
Genome contig ID	gi51511721r_77716810
PolyA signal sequence (ATTAAA,-22)	+--------+--------+----*----+---- TCCCCAGATCTTAATTAAACCAGATTTTGCAATTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTCTTATTCTTTCAAGTCTGAGTATACTGGCTTCAATATGATGTGTATA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	r	77816810	77841687	2	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0206

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information