HUGE

Gene/Protein Characteristic Table for KIAA0219

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05284
Accession No. :	D86973
Description :	GCN1-like protein 1.
HUGO Gene Name :	GCN1 general control of amino-acid synthesis 1-like 1 (yeast) (GCN1L1)
Clone Name :	ha04759s1 [Vector Info]
Source :	Myeloblast cell line (KG-1)
Note :	We replaced ha04759, former representative clones for KIAA0219 with ha04759s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 8608 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 579 bp

Genome contig ID gi89161190r_118949457
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
AGAGGAATGTTTAATAAAGGCTTTGATTTAATCTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GATATAAACAGATTTTTAAAAATCTCCACCCATTAAACATGAAGCTTCCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 119049457 119116896 58 99.8 Perfect prediction

Features of the protein sequence	Description

Length: 2675 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q92616	100.0	Translational a...	Homo sapiens
NP_006827	100.0	GCN1 general co...	Homo sapiens
XP_001159608	99.7	GCN1 general co...	Pan troglodytes
XP_534701	96.8	similar to GCN1...	Canis lupus fam...
XP_001488898	96.8	GCN1 general co...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000357 1458 1494 PF02985 HEAT

IPR000357 1497 1532 PF02985 HEAT

IPR000357 1537 1573 PF02985 HEAT

IPR000357 1614 1650 PF02985 HEAT

IPR000357 1656 1692 PF02985 HEAT

IPR000357 1776 1812 PF02985 HEAT

IPR000357 1814 1850 PF02985 HEAT

IPR000357 1924 1960 PF02985 HEAT

IPR000357 1962 1998 PF02985 HEAT

IPR000357 2004 2040 PF02985 HEAT

IPR000357 2191 2227 PF02985 HEAT

IPR000357 2346 2382 PF02985 HEAT

IPR000357 2425 2461 PF02985 HEAT

IPR000357 2591 2627 PF02985 HEAT

ProfileScan IPR000357 1620 1658 PS50077 HEAT

IPR000357 1662 1700 PS50077 HEAT

IPR000357 2010 2047 PS50077 HEAT

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000357	1458	1494	PF02985	HEAT
IPR000357	1497	1532	PF02985	HEAT
IPR000357	1537	1573	PF02985	HEAT
IPR000357	1614	1650	PF02985	HEAT
IPR000357	1656	1692	PF02985	HEAT
IPR000357	1776	1812	PF02985	HEAT
IPR000357	1814	1850	PF02985	HEAT
IPR000357	1924	1960	PF02985	HEAT
IPR000357	1962	1998	PF02985	HEAT
IPR000357	2004	2040	PF02985	HEAT
IPR000357	2191	2227	PF02985	HEAT
IPR000357	2346	2382	PF02985	HEAT
IPR000357	2425	2461	PF02985	HEAT
IPR000357	2591	2627	PF02985	HEAT
ProfileScan	IPR000357	1620	1658	PS50077	HEAT
IPR000357	1662	1700	PS50077	HEAT
IPR000357	2010	2047	PS50077	HEAT

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 114 GSAALLALTWTCLLVRIVFPSR 135 PRIMARY 22

2 141 DIWNKLVEVQCLLLLEVLGGSHK 163 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	114	GSAALLALTWTCLLVRIVFPSR	135	PRIMARY	22
2	141	DIWNKLVEVQCLLLLEVLGGSHK	163	SECONDARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: GTGGGTTCCTCTTCTCCTGTG
Primer_r	: AAAAGCCAAGCCAGACACACC
PCR product length	: 127 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	579 bp
Genome contig ID	gi89161190r_118949457
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- AGAGGAATGTTTAATAAAGGCTTTGATTTAATCTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* GATATAAACAGATTTTTAAAAATCTCCACCCATTAAACATGAAGCTTCCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	119049457	119116896	58	99.8	Perfect prediction

Gene/Protein Characteristic Table for KIAA0219

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information