HUGE

Gene/Protein Characteristic Table for KIAA0233

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Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04967
Accession No. :	D87071
Description :	Protein FAM38A.
HUGO Gene Name :	family with sequence similarity 38, member A (FAM38A)
Clone Name :	ha04602 [Vector Info]
Flexi ORF Clone :	pF1KA0233
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6368 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 258 bp

Genome contig ID gi51511732r_87209256
PolyA signal sequence
(ATTAAA,-29)
+----*----+----*----+----*----+----
TTTTTAATTAAAAAATGTTTTATTTATACAAATGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACAATCAGAGGCCAGTCCCCCGTCCTTGCCTTCCGGCTCCAGTGTGGTGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 r 87309256 87330160 40 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 2035 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q92508	100.0	Protein FAM38A;...	Homo sapiens
BAF03565	100.0	Mib [Homo sapiens].	Homo sapiens
BAG10304	100.0	FAM38A protein ...	synthetic construct
EAW66773	100.0	hCG1980844, iso...	Homo sapiens
EAW66770	99.9	hCG1980844, iso...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR003006 1194 1200 PS00290 Immunoglobulin/major histocompatibility complex motif

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR003006	1194	1200	PS00290	Immunoglobulin/major histocompatibility complex motif

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 27 PCLDLGAMLLYTLTFWLLLRQFV 49 SECONDARY 23

2 106 VSFAGRLVVYKIVYMFLFLLCLT 128 PRIMARY 23

3 141 LKAFWWLVVAYTMLVLIAVYTF 162 PRIMARY 22

4 194 ELFSSILVPGFFLLACILQLHYF 216 PRIMARY 23

5 335 YTVWVALKEVSVMNLLLVVLWAF 357 PRIMARY 23

6 368 ASCLSTVWTCVIIVCKMLYQLKV 390 SECONDARY 23

7 495 GCLKYFINFFFYKFGLEICFLMA 517 SECONDARY 23

8 520 VIGQRMNFLVTLHGCWLVAILT 541 SECONDARY 22

9 557 LFLALFLLYQYLLCLGMPPALCI 579 PRIMARY 23

10 670 DMLKVAVFRYLFWLVLVVVFVTG 692 PRIMARY 23

11 697 SIFGLGYLLACFYLLLFGTALLQ 719 PRIMARY 23

12 727 VLWDCLILYNVTVIISKNMLSLL 749 PRIMARY 23

13 754 VEQMQTGFCWVIQLFSLVCTVK 775 SECONDARY 22

14 792 LPVEEAGIIWDSVCFFFLLLQR 813 SECONDARY 22

15 1188 RLLRAVYQCVAAHSELLCYFIII 1210 SECONDARY 23

16 1217 ASAGSLVLPVLVFLWAMLSIPRP 1239 PRIMARY 23

17 1243 FWMTAIVFTEIAVVVKYLFQFGF 1265 SECONDARY 23

18 1473 DVYALMFLADVVDFIIIIFGFWA 1495 PRIMARY 23

19 1515 PEAFLVMLLIQFSTMVVDRALYL 1537 SECONDARY 23

20 1545 LAFQVALVLAIHLWMFFILPAVT 1567 PRIMARY 23

21 1573 QNVVAQLWYFVKCIYFALSAYQI 1595 SECONDARY 23

22 1692 LIILFLIAIIWFPLLFMSLVRSV 1714 PRIMARY 23

23 1954 IMGLYVSIVLVIGKFVRGFFSEI 1976 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	27	PCLDLGAMLLYTLTFWLLLRQFV	49	SECONDARY	23
2	106	VSFAGRLVVYKIVYMFLFLLCLT	128	PRIMARY	23
3	141	LKAFWWLVVAYTMLVLIAVYTF	162	PRIMARY	22
4	194	ELFSSILVPGFFLLACILQLHYF	216	PRIMARY	23
5	335	YTVWVALKEVSVMNLLLVVLWAF	357	PRIMARY	23
6	368	ASCLSTVWTCVIIVCKMLYQLKV	390	SECONDARY	23
7	495	GCLKYFINFFFYKFGLEICFLMA	517	SECONDARY	23
8	520	VIGQRMNFLVTLHGCWLVAILT	541	SECONDARY	22
9	557	LFLALFLLYQYLLCLGMPPALCI	579	PRIMARY	23
10	670	DMLKVAVFRYLFWLVLVVVFVTG	692	PRIMARY	23
11	697	SIFGLGYLLACFYLLLFGTALLQ	719	PRIMARY	23
12	727	VLWDCLILYNVTVIISKNMLSLL	749	PRIMARY	23
13	754	VEQMQTGFCWVIQLFSLVCTVK	775	SECONDARY	22
14	792	LPVEEAGIIWDSVCFFFLLLQR	813	SECONDARY	22
15	1188	RLLRAVYQCVAAHSELLCYFIII	1210	SECONDARY	23
16	1217	ASAGSLVLPVLVFLWAMLSIPRP	1239	PRIMARY	23
17	1243	FWMTAIVFTEIAVVVKYLFQFGF	1265	SECONDARY	23
18	1473	DVYALMFLADVVDFIIIIFGFWA	1495	PRIMARY	23
19	1515	PEAFLVMLLIQFSTMVVDRALYL	1537	SECONDARY	23
20	1545	LAFQVALVLAIHLWMFFILPAVT	1567	PRIMARY	23
21	1573	QNVVAQLWYFVKCIYFALSAYQI	1595	SECONDARY	23
22	1692	LIILFLIAIIWFPLLFMSLVRSV	1714	PRIMARY	23
23	1954	IMGLYVSIVLVIGKFVRGFFSEI	1976	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CTGGTCATCGGCAAGTTCGTG
Primer_r	: GGTGAGCGGTAGAGGAAGATG
PCR product length	: 185 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	258 bp
Genome contig ID	gi51511732r_87209256
PolyA signal sequence (ATTAAA,-29)	+--------+--------+----*----+---- TTTTTAATTAAAAAATGTTTTATTTATACAAATGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACAATCAGAGGCCAGTCCCCCGTCCTTGCCTTCCGGCTCCAGTGTGGTGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	r	87309256	87330160	40	99.7	Perfect prediction

Gene/Protein Characteristic Table for KIAA0233

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information