HUGE

Gene/Protein Characteristic Table for KIAA0245

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00475
Accession No. :	D87432
Description :	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6.
HUGO Gene Name :	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 (SLC7A6)
Clone Name :	ha07016 [Vector Info]
Flexi ORF Clone :	pF1KSDA0245
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 6296 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4487 bp

Genome contig ID gi51511732f_66757995
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TGTTATCAGACACCAATAAATTCTTTTTGTTGGGC
Flanking genome sequence
(135230 - 135279)
----+----*----+----*----+----*----+----*----+----*
CTTCTTCTCTCTTCTTTAATATAGTTACTACGGGAATTATGTTGTCAGAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 66857995 66893223 11 99.3 Terminal No-hit

Features of the protein sequence	Description

Length: 552 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001146701	7.5e-211	98.3	solute carrier ...	Pan troglodytes
Q92536	2e-205	100.0	Y+L amino acid ...	Homo sapiens
CAH18146	2e-204	99.6	hypothetical pr...	Homo sapiens
NP_001069405	1.3e-186	89.9	solute carrier ...	Bos taurus
EDL92441	4e-186	89.5	solute carrier ...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB046833	4.5e-05	21.1	KIAA1613

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004841 86 519 PF00324 Amino acid permease-associated region

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004841	86	519	PF00324	Amino acid permease-associated region

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 83 SLLNGVSLVVGNMIGSGIFVSPK 105 SECONDARY 23

2 115 GMSLIVWAIGGLFSVVGALCYAE 137 PRIMARY 23

3 159 FIAFIRLWVSLLVVEPTGQAIIA 181 PRIMARY 23

4 201 LACRLLAAACICLLTFVNCAYVK 223 PRIMARY 23

5 232 FTYAKVVALIAIIVMGLVKLCQG 254 PRIMARY 23

6 313 PIVTLIYILTNVAYYTVLNISDV 335 PRIMARY 23

7 357 IPIAVALSCFGGLNASIFASSRL 379 SECONDARY 23

8 403 PIPALLFNCTMALIYLIVEDVFQ 425 PRIMARY 23

9 460 KLSVFFPIVFCICSVFLVIVPLF 482 PRIMARY 23

10 486 INSLIGIGIALSGVPFYFMGVY 507 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	83	SLLNGVSLVVGNMIGSGIFVSPK	105	SECONDARY	23
2	115	GMSLIVWAIGGLFSVVGALCYAE	137	PRIMARY	23
3	159	FIAFIRLWVSLLVVEPTGQAIIA	181	PRIMARY	23
4	201	LACRLLAAACICLLTFVNCAYVK	223	PRIMARY	23
5	232	FTYAKVVALIAIIVMGLVKLCQG	254	PRIMARY	23
6	313	PIVTLIYILTNVAYYTVLNISDV	335	PRIMARY	23
7	357	IPIAVALSCFGGLNASIFASSRL	379	SECONDARY	23
8	403	PIPALLFNCTMALIYLIVEDVFQ	425	PRIMARY	23
9	460	KLSVFFPIVFCICSVFLVIVPLF	482	PRIMARY	23
10	486	INSLIGIGIALSGVPFYFMGVY	507	PRIMARY	22

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: CCTTCACACTGGAGTATTTTG
Primer_r	: TTGCATATTCTTTTGGGGAGG
PCR product length	: 170 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4487 bp
Genome contig ID	gi51511732f_66757995
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TGTTATCAGACACCAATAAATTCTTTTTGTTGGGC
Flanking genome sequence (135230 - 135279)	----+--------+--------+--------+--------+----* CTTCTTCTCTCTTCTTTAATATAGTTACTACGGGAATTATGTTGTCAGAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	66857995	66893223	11	99.3	Terminal No-hit

Gene/Protein Characteristic Table for KIAA0245

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information