HUGE

Gene/Protein Characteristic Table for KIAA1613

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00878
Accession No. :	AB046833
Description :	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14.
HUGO Gene Name :	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 (SLC7A14)
Clone Name :	fj12845 [Vector Info]
Flexi ORF Clone :	pF1KSDA1613
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4573 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2511 bp

Genome contig ID gi89161205r_171565047
PolyA signal sequence
(GATAAA,-31)
+----*----+----*----+----*----+----
AGTTGATAAATCACCTCCCTAGCAACCTTAGTTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAATCACTAAGATAGAAAAAGTATTTTCAGGTACATAGACATG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 171665047 171727186 7 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 686 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH22968	100.0	SLC7A14 protein...	Homo sapiens
EAW78510	100.0	solute carrier ...	Homo sapiens
XP_526378	99.9	solute carrier ...	Pan troglodytes
Q8TBB6	99.9	Probable cation...	Homo sapiens
XP_001088713	99.1	similar to solu...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
D87432	6.7e-06	21.5	KIAA0245

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004841 4 352 PF00324 Amino acid permease-associated region

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004841	4	352	PF00324	Amino acid permease-associated region

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 6 GPGVIVSFIIAAVASILSGVCYA 28 PRIMARY 23

2 51 EFVAFFIGWNLILEYLIGTAAGA 73 PRIMARY 23

3 109 YPDLLALLIAVIVTIIVALGVKN 131 PRIMARY 23

4 138 VLNVLNLAVWVFIMIAGLFFIN 159 PRIMARY 22

5 177 LQGAATCFYAFIGFDIIATTGE 198 SECONDARY 22

6 211 ITASLVICLTAYVSVSVILTLMV 233 PRIMARY 23

7 260 VAIGSVAGLTVSLLGSLFPMPRV 282 SECONDARY 23

8 305 TPVVACIVSGFLAALLALLVSLR 327 PRIMARY 23

9 332 MMSIGTLLAYTLVSVCVLLLRY 353 PRIMARY 22

10 485 HTVTICVLLLFILMFIFCSFIIF 507 PRIMARY 23

11 517 WWAILLVVLMVLLISTLVFVILQ 539 PRIMARY 23

12 548 PYMAPCLPFVPAFAMLVNIYLML 570 PRIMARY 23

13 575 ITWIRFAVWCFVGLLIYFGYGIW 597 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	GPGVIVSFIIAAVASILSGVCYA	28	PRIMARY	23
2	51	EFVAFFIGWNLILEYLIGTAAGA	73	PRIMARY	23
3	109	YPDLLALLIAVIVTIIVALGVKN	131	PRIMARY	23
4	138	VLNVLNLAVWVFIMIAGLFFIN	159	PRIMARY	22
5	177	LQGAATCFYAFIGFDIIATTGE	198	SECONDARY	22
6	211	ITASLVICLTAYVSVSVILTLMV	233	PRIMARY	23
7	260	VAIGSVAGLTVSLLGSLFPMPRV	282	SECONDARY	23
8	305	TPVVACIVSGFLAALLALLVSLR	327	PRIMARY	23
9	332	MMSIGTLLAYTLVSVCVLLLRY	353	PRIMARY	22
10	485	HTVTICVLLLFILMFIFCSFIIF	507	PRIMARY	23
11	517	WWAILLVVLMVLLISTLVFVILQ	539	PRIMARY	23
12	548	PYMAPCLPFVPAFAMLVNIYLML	570	PRIMARY	23
13	575	ITWIRFAVWCFVGLLIYFGYGIW	597	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGCAAAATCTTAACGTGGGTG

Primer_r
: ACTATGTGGGAAAAATGGCTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2511 bp
Genome contig ID	gi89161205r_171565047
PolyA signal sequence (GATAAA,-31)	+--------+--------+----*----+---- AGTTGATAAATCACCTCCCTAGCAACCTTAGTTTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAATCACTAAGATAGAAAAAGTATTTTCAGGTACATAGACATG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	171665047	171727186	7	99.4	Perfect prediction

Primer_f	: GGCAAAATCTTAACGTGGGTG
Primer_r	: ACTATGTGGGAAAAATGGCTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1613

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information