HUGE

Gene/Protein Characteristic Table for KIAA0485

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK07633
Accession No. :	AB007954
Description :
HUGO Gene Name :
Clone Name :	hg00837 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6565 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1954 bp

Genome contig ID gi89161185f_61262746
PolyA signal sequence
(ACTAAA,-26)
+----*----+----*----+----*----+----
TATTTTATCACTAAATGCTTAAGTGTTTATGTTGC
Flanking genome sequence
(107159 - 107208)
----+----*----+----*----+----*----+----*----+----*
AAAAAGAAAAGGAAAAAAAAAAGATTCCCACTTGGACTCTCAAACCATGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 61362746 61369903 2 98.6 Perfect prediction

Features of the protein sequence	Description

Length: 83 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW74756	2.7e-21	71.4	hCG1820410 [Hom...	Homo sapiens
EAW56733	5.3e-19	75.8	similar to zinc...	Homo sapiens
BAE01629	1.5e-18	65.3	unnamed protein...	Macaca fascicularis
BAA91131	4.3e-17	64.1	unnamed protein...	Homo sapiens
EAX08445	4.4e-17	70.1	hCG2019873 [Hom...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB051442	1.4e-13	52.9	KIAA1655

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 54 TPPAWVIFVFLVEMGFQHVGQ 74 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	54	TPPAWVIFVFLVEMGFQHVGQ	74	PRIMARY	21

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTAGAGGCTCCAGATCCAATG
Primer_r	: CATATTAGGGGAAGAGTAGGG
PCR product length	: 125 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1954 bp
Genome contig ID	gi89161185f_61262746
PolyA signal sequence (ACTAAA,-26)	+--------+--------+----*----+---- TATTTTATCACTAAATGCTTAAGTGTTTATGTTGC
Flanking genome sequence (107159 - 107208)	----+--------+--------+--------+--------+----* AAAAAGAAAAGGAAAAAAAAAAGATTCCCACTTGGACTCTCAAACCATGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	61362746	61369903	2	98.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0485

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information