HUGE

Gene/Protein Characteristic Table for KIAA0494

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK05606
Accession No. :	AB007963
Description :
HUGO Gene Name :
Clone Name :	hh00201 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5766 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3301 bp

Genome contig ID gi89161185r_46813420
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
AATTTAGCTAAATAAAAAAATTTCTTTTTTCTCTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATGTGTCTGACTAAAGCCTCTCTCACTCCCCTGCGATTTTTAAGGGAAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 46913420 46957323 11 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 536 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EDL30637	1.6e-127	74.3	RIKEN cDNA 4732...	Mus musculus
EDL90308	1.6e-117	82.4	similar to RIKE...	Rattus norvegicus
AAH59213	7.5e-113	79.6	RIKEN cDNA 4732...	Mus musculus
CAM15280	8.9e-113	73.0	novel protein [...	Mus musculus
BAC26732	1.4e-112	79.4	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan IPR002048 475 510 PS50222 Calcium-binding EF-hand

IPR002048 512 536 PS50222 Calcium-binding EF-hand

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	IPR002048	475	510	PS50222	Calcium-binding EF-hand
IPR002048	512	536	PS50222	Calcium-binding EF-hand

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 112 ICYPLCGFVILAACVVACVGLVW 134 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	112	ICYPLCGFVILAACVVACVGLVW	134	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ACCAACGCCAACAACAACGTG
Primer_r	: CAACTCTCGGCCACTCACACG
PCR product length	: 105 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3301 bp
Genome contig ID	gi89161185r_46813420
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- AATTTAGCTAAATAAAAAAATTTCTTTTTTCTCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATGTGTCTGACTAAAGCCTCTCTCACTCCCCTGCGATTTTTAAGGGAAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	46913420	46957323	11	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0494

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information