HUGE

Gene/Protein Characteristic Table for KIAA0500

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK07629
Accession No. :	AB007969
Description :
HUGO Gene Name :
Clone Name :	hg00404 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6577 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2878 bp

Genome contig ID gi51511730r_94618029
PolyA signal sequence
(TATAAA,-20)
+----*----+----*----+----*----+----
AAGAAAATTTTTGAATATAAATTTCTTGAACTGAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GATTTCGTTGATGATACTTATTTTCATGTGTGTTTGTGGTTTTGACAACC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 94718029 94724605 1 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 213 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB01630	2.4e-21	60.2	unnamed portein...	Macaca fascicularis
BAB15056	2.6e-21	55.8	unnamed protein...	Homo sapiens
BAB15071	5.3e-21	54.6	unnamed protein...	Homo sapiens
BAC85220	9.1e-20	59.0	unnamed protein...	Homo sapiens
BAA91205	9.9e-20	63.3	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB051438	6.7e-14	51.8	KIAA1651
AB002362	0.00024	60.6	KIAA0364

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ACTCCAGTTAATTCCCACAGG
Primer_r	: AACTAAACTTGGAGACAGGAG
PCR product length	: 359 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2878 bp
Genome contig ID	gi51511730r_94618029
PolyA signal sequence (TATAAA,-20)	+--------+--------+----*----+---- AAGAAAATTTTTGAATATAAATTTCTTGAACTGAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* GATTTCGTTGATGATACTTATTTTCATGTGTGTTTGTGGTTTTGACAACC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	94718029	94724605	1	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0500

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information