HUGE

Gene/Protein Characteristic Table for KIAA0609

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00107
Accession No. :	AB011181
Description :	Glycosyltransferase-like protein LARGE1.
HUGO Gene Name :	like-glycosyltransferase (LARGE)
Clone Name :	hk00807 [Vector Info]
Flexi ORF Clone :	pF1KA0609
Source :	Human adult brain
Note :	We replaced hh00979b, former representative clones for KIAA0609 with hk00807. (2000/1/08)

Features of the cloned DNA sequence	Description

Length: 3884 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1338 bp

Genome contig ID gi89161203r_31899075
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
AGCGAAAGCTGCATTTAATAAATGAAAGTACAGAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TGTTTCTTCCCCATTCCCCTCCCACTCTTGCAGGAAGCTACTGAGACACA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 22 r 31999075 32646331 14 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 769 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG11217	0	100.0	glycosyltransfe...	synthetic construct
BAH11875	0	86.5	unnamed protein...	Homo sapiens
XP_531751	6.1e-165	89.8	similar to like...	Canis lupus fam...
O95461	4.3e-160	93.1	Glycosyltransfe...	Homo sapiens
XP_001112944	8e-160	93.0	similar to like...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002495 205 481 PF01501 Glycosyl transferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002495	205	481	PF01501	Glycosyl transferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 76 FLAASLSLLCIPAITWIYLFSGS 98 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	76	FLAASLSLLCIPAITWIYLFSGS	98	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: CAACCACCTTCACCTTCACAC

Primer_r
: AATACAAACAGCCCAGCAGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 22

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAACCACCTTCACCTTCACAC
Primer_r	: AATACAAACAGCCCAGCAGAG
PCR product length	: 108 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1338 bp
Genome contig ID	gi89161203r_31899075
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- AGCGAAAGCTGCATTTAATAAATGAAAGTACAGAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGTTTCTTCCCCATTCCCCTCCCACTCTTGCAGGAAGCTACTGAGACACA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	22	r	31999075	32646331	14	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0609

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information