HUGE

Gene/Protein Characteristic Table for KIAA0690

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00606
Accession No. :	AB014590
Description :	RRP12-like protein.
HUGO Gene Name :
Clone Name :	hk03594 [Vector Info]
Flexi ORF Clone :	pF1KSDA0690
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4038 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 1214 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAI40776	99.9	ribosomal RNA p...	Homo sapiens
XP_001102356	97.7	hypothetical pr...	Macaca mulatta
XP_001102447	97.3	hypothetical pr...	Macaca mulatta
NP_001138586	96.8	ribosomal RNA p...	Homo sapiens
Q5JTH9	92.2	RRP12-like protein.	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000357 327 363 PF02985 HEAT

IPR012978 388 586 PF08161 Domain of unknown function

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000357	327	363	PF02985	HEAT
IPR012978	388	586	PF08161	Domain of unknown function

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 822 LIYPGLVGAVTMVSCSILALTHL 844 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	822	LIYPGLVGAVTMVSCSILALTHL	844	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: TGACTTGGAACTAGGGCTTGG

Primer_r
: AGGCCACATTCCCATCTCCAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGACTTGGAACTAGGGCTTGG
Primer_r	: AGGCCACATTCCCATCTCCAG
PCR product length	: 106 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA0690

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information