HUGE

Gene/Protein Characteristic Table for KIAA0713

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06928
Accession No. :	AB018256
Description :	Sorting nexin-13.
HUGO Gene Name :	sorting nexin 13 (SNX13)
Clone Name :	hg04739 [Vector Info]
Flexi ORF Clone :	pF1KA0713
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6817 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3977 bp

Genome contig ID gi89161213r_17698991
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
TTAATTTTATATCAATAAAATAAAATACTTTCTCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTTTTGGAGCTTCTGTATTTCCTATAGTTTTCTGACTGTCCATTTTATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 r 17798991 17946616 25 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 945 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001103565	98.8	sorting nexin 1...	Macaca mulatta
XP_532486	96.4	similar to Sort...	Canis lupus fam...
EAW93697	99.9	sorting nexin 1...	Homo sapiens
Q9Y5W8	99.8	Sorting nexin-1...	Homo sapiens
BAE21613	96.9	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB023192	8.4e-06	37.4	KIAA0975

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR000342 486 570 PD001580 Regulator of G protein signalling

HMMPfam IPR003114 154 341 PF02194 PX-associated

IPR000342 497 553 PF00615 Regulator of G protein signalling

IPR001683 631 744 PF00787 Phox-like

IPR013937 860 943 PF08628 Sorting nexin

HMMSmart IPR013996 154 341 SM00313 PX-associated

IPR000342 430 570 SM00315 Regulator of G protein signalling

IPR001683 630 744 SM00312 Phox-like

ProfileScan IPR003114 154 341 PS51207 PX-associated

IPR000342 430 553 PS50132 Regulator of G protein signalling

IPR001683 627 748 PS50195 Phox-like

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000342	486	570	PD001580	Regulator of G protein signalling
HMMPfam	IPR003114	154	341	PF02194	PX-associated
IPR000342	497	553	PF00615	Regulator of G protein signalling
IPR001683	631	744	PF00787	Phox-like
IPR013937	860	943	PF08628	Sorting nexin
HMMSmart	IPR013996	154	341	SM00313	PX-associated
IPR000342	430	570	SM00315	Regulator of G protein signalling
IPR001683	630	744	SM00312	Phox-like
ProfileScan	IPR003114	154	341	PS51207	PX-associated
IPR000342	430	553	PS50132	Regulator of G protein signalling
IPR001683	627	748	PS50195	Phox-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 22 EGAVAAVGGGPSSFRCCYGCCHE 44 SECONDARY 23

2 56 VIMLTEASLSIWGWGSLGIVLFL 78 PRIMARY 23

3 88 YLTFYILCFVGGGLVVTLLFGKT 110 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	22	EGAVAAVGGGPSSFRCCYGCCHE	44	SECONDARY	23
2	56	VIMLTEASLSIWGWGSLGIVLFL	78	PRIMARY	23
3	88	YLTFYILCFVGGGLVVTLLFGKT	110	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AATCCACCACTACCAAGAGAG

Primer_r
: CACTCTGGCACTTTGTCATTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AACATCTCTTTCAGGTCTGGA
Primer_r	: CCCTAAGAGCAAAACACAGCC
PCR product length	: 208 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3977 bp
Genome contig ID	gi89161213r_17698991
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- TTAATTTTATATCAATAAAATAAAATACTTTCTCT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTTTTGGAGCTTCTGTATTTCCTATAGTTTTCTGACTGTCCATTTTATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	r	17798991	17946616	25	99.4	Perfect prediction

Primer_f	: AATCCACCACTACCAAGAGAG
Primer_r	: CACTCTGGCACTTTGTCATTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0713

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information