HUGE

Gene/Protein Characteristic Table for KIAA0779

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07129
Accession No. :	AB018322
Description :	Transmembrane and coiled-coil domains protein 1.
HUGO Gene Name :	transmembrane and coiled-coil domain family 1 (TMCC1)
Clone Name :	hk05356 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 3743 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 320 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAE45831	6.2e-106	100.0	hypothetical pr...	Homo sapiens
BAG56915	8.2e-106	100.0	unnamed protein...	Homo sapiens
EAW79233	8.3e-106	100.0	transmembrane a...	Homo sapiens
EAW79231	9e-106	100.0	transmembrane a...	Homo sapiens
NP_001121696	9e-106	100.0	transmembrane a...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007950	3e-44	64.0	KIAA0481
AB032971	1.3e-31	53.3	KIAA1145

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom NULL 123 186 PD068654 NULL

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	NULL	123	186	PD068654	NULL

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 257 INILLAVMAVLLVFVSTVANCVV 279 PRIMARY 23

2 287 RTFSTLFLVVFIAFLWKHWDALF 309 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	257	INILLAVMAVLLVFVSTVANCVV	279	PRIMARY	23
2	287	RTFSTLFLVVFIAFLWKHWDALF	309	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGTAATGGCTTTCTTGTCCC

Primer_r
: AGAGCGAGGTTATAGAAGAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Primer_f	: CAGTAATGGCTTTCTTGTCCC
Primer_r	: AGAGCGAGGTTATAGAAGAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0779

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information