HUGE

Gene/Protein Characteristic Table for KIAA0800

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01675
Accession No. :	AB018343
Description :	Protein VPRBP.
HUGO Gene Name :	Vpr (HIV-1) binding protein (VPRBP)
Clone Name :	hg03850s1 [Vector Info]
Flexi ORF Clone :	pF1KA0800
Source :	Human adult brain
Note :	We replaced hg03850, former representative clones for KIAA0800 with hg03850s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5984 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1292 bp

Genome contig ID gi89161205r_51308382
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AAAACAGGCAAATAAATAAACATGCTTAACATGTC
Flanking genome sequence
(99956 - 99907)
----+----*----+----*----+----*----+----*----+----*
TTTGTGTTGCTGTTTTGTTATGAACGTGCTTGCTCTCTTGCGAGGCACCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 51408338 51509041 25 100.0 Internal No-hit

Features of the protein sequence	Description

Length: 1521 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9Y4B6	100.0	Protein VPRBP; ...	Homo sapiens
EAW65142	99.9	Vpr (HIV-1) bin...	Homo sapiens
XP_001169544	99.9	VprBP protein i...	Pan troglodytes
AAI10372	99.9	VPRBP protein [...	Homo sapiens
EAW65141	99.5	Vpr (HIV-1) bin...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013720 862 888 PF08513 LisH dimerisation motif

HMMSmart IPR006594 860 892 SM00667 LisH dimerisation motif

ProfileScan IPR006594 860 892 PS50896 LisH dimerisation motif

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013720	862	888	PF08513	LisH dimerisation motif
HMMSmart	IPR006594	860	892	SM00667	LisH dimerisation motif
ProfileScan	IPR006594	860	892	PS50896	LisH dimerisation motif

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 601 PAEVFLKLSCVQLLLQLISIACN 623 SECONDARY 23

2 632 DTVRFALDVLAILTVVPKIQLQL 654 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	601	PAEVFLKLSCVQLLLQLISIACN	623	SECONDARY	23
2	632	DTVRFALDVLAILTVVPKIQLQL	654	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AACAACATACCAAGGCAGCTC

Primer_r
: AGTCAGTTGGGTACAGCAGGA

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AACAACATACCAAGGCAGCTC
Primer_r	: AGTCAGTTGGGTACAGCAGGA
PCR product length	: 160 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1292 bp
Genome contig ID	gi89161205r_51308382
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- AAAACAGGCAAATAAATAAACATGCTTAACATGTC
Flanking genome sequence (99956 - 99907)	----+--------+--------+--------+--------+----* TTTGTGTTGCTGTTTTGTTATGAACGTGCTTGCTCTCTTGCGAGGCACCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	51408338	51509041	25	100.0	Internal No-hit

Gene/Protein Characteristic Table for KIAA0800

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information