HUGE

Gene/Protein Characteristic Table for KIAA0805

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05622
Accession No. :	AB018348
Description :	Pecanex-like protein 1.
HUGO Gene Name :
Clone Name :	hk02940s1 [Vector Info]
Source :	Human adult brain
Note :	We replaced hk02940, former representative clones for KIAA0805 with hk02940s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4204 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 218 bp

Genome contig ID gi51511730f_70449501
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
CATCCCCAAATAAAGCTGAAATATTTTTTTAAGTT
Flanking genome sequence
(197124 - 197173)
----+----*----+----*----+----*----+----*----+----*
AGCTGCCGAGAAAACATTTTGCATGAAGGATAAAGTTCTGTTAAAATACA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 70549501 70646623 25 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1327 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW81053	99.9	pecanex homolog...	Homo sapiens
XP_001787908	86.3	similar to rCG2...	Bos taurus
XP_866477	61.9	similar to peca...	Canis lupus fam...
AAK82958	94.9	pecanex-like pr...	Homo sapiens
AAI40785	94.8	PCNX protein [H...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007895	3.2e-93	53.6	KIAA0435

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007735 765 995 PF05041 Pecanex

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007735	765	995	PF05041	Pecanex

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 34 FWILPQLWIGINFDRLTLLALFD 56 SECONDARY 23

2 63 ENVLAVILAILVAFLGSILLIQG 85 PRIMARY 23

3 125 IAYSRPVYFCICCGLIWLLDYGS 147 SECONDARY 23

4 172 RDLVIVFTLCFPIVFFIGLLPQV 194 PRIMARY 23

5 219 LAALYSFICSIVAVALLYGLCYG 241 PRIMARY 23

6 249 GQHIPVLFSIFCGLLVAVSYHLS 271 PRIMARY 23

7 322 SDLVVCIVIGVLYFAIHVSTVFT 344 PRIMARY 23

8 350 LKYVLYTLVGFVGFVTHYVLPQV 372 PRIMARY 23

9 411 WLLFVEKNIIYPLIVLNELSSSA 433 SECONDARY 23

10 495 LFFMSILFNKLWELLYKLQFVYT 517 SECONDARY 23

11 536 PFAVPHSAMLFIQAAVSAFFSTP 558 SECONDARY 23

12 560 NPFLGSAIFITSYVRPVKFWER 581 SECONDARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	34	FWILPQLWIGINFDRLTLLALFD	56	SECONDARY	23
2	63	ENVLAVILAILVAFLGSILLIQG	85	PRIMARY	23
3	125	IAYSRPVYFCICCGLIWLLDYGS	147	SECONDARY	23
4	172	RDLVIVFTLCFPIVFFIGLLPQV	194	PRIMARY	23
5	219	LAALYSFICSIVAVALLYGLCYG	241	PRIMARY	23
6	249	GQHIPVLFSIFCGLLVAVSYHLS	271	PRIMARY	23
7	322	SDLVVCIVIGVLYFAIHVSTVFT	344	PRIMARY	23
8	350	LKYVLYTLVGFVGFVTHYVLPQV	372	PRIMARY	23
9	411	WLLFVEKNIIYPLIVLNELSSSA	433	SECONDARY	23
10	495	LFFMSILFNKLWELLYKLQFVYT	517	SECONDARY	23
11	536	PFAVPHSAMLFIQAAVSAFFSTP	558	SECONDARY	23
12	560	NPFLGSAIFITSYVRPVKFWER	581	SECONDARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGGTACTAGAACTTGGGGCTG

Primer_r
: GCTTTATTTGGGGATGGAGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGGTACTAGAACTTGGGGCTG
Primer_r	: GCTTTATTTGGGGATGGAGAC
PCR product length	: 228 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	218 bp
Genome contig ID	gi51511730f_70449501
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- CATCCCCAAATAAAGCTGAAATATTTTTTTAAGTT
Flanking genome sequence (197124 - 197173)	----+--------+--------+--------+--------+----* AGCTGCCGAGAAAACATTTTGCATGAAGGATAAAGTTCTGTTAAAATACA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	70549501	70646623	25	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0805

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information