HUGE

Gene/Protein Characteristic Table for KIAA0831

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00648
Accession No. :	AB020638
Description :
HUGO Gene Name :
Clone Name :	hj04502 [Vector Info]
Flexi ORF Clone :	pF1KSDA0831
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4943 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3227 bp

Genome contig ID gi51511730r_54802863
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTTATTGTATTACTGCAATAAATCTTTTAACAGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTTTGCTCATGTGTATGTCTTTTTCAAACTGTTCATTTGCACTGCTGCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 54902863 54930775 8 98.9 Terminal No-hit

Features of the protein sequence	Description

Length: 406 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001162169	3.3e-150	100.0	hypothetical pr...	Pan troglodytes
XP_001088634	1.4e-149	99.7	similar to CG11...	Macaca mulatta
XP_001914895	7.2e-146	96.1	similar to CG11...	Equus caballus
XP_583052	9.6e-146	95.8	similar to CG11...	Bos taurus
XP_547826	1.5e-145	96.3	similar to DNA ...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGGGAAAAACAGTATATCACC

Primer_r
: AGTCCTCTAACAGCATGCCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGGGAAAAACAGTATATCACC
Primer_r	: AGTCCTCTAACAGCATGCCAC
PCR product length	: 97 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3227 bp
Genome contig ID	gi51511730r_54802863
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TTTTATTGTATTACTGCAATAAATCTTTTAACAGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTTTGCTCATGTGTATGTCTTTTTCAAACTGTTCATTTGCACTGCTGCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	54902863	54930775	8	98.9	Terminal No-hit

Gene/Protein Characteristic Table for KIAA0831

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information