HUGE

Gene/Protein Characteristic Table for KIAA0847

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07237
Accession No. :	AB020654
Description :	Tau-tubulin kinase 2.
HUGO Gene Name :	tau tubulin kinase 2 (TTBK2)
Clone Name :	hk05395 [Vector Info]
Flexi ORF Clone :	pF1KA0847
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 3386 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1447 bp

Genome contig ID gi51511731r_40723838
PolyA signal sequence
(AATACA,-21)
+----*----+----*----+----*----+----
TTGCTGCCAAACCTAATACAGTTGAATTGGGAAAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAGAAAGGAATACATTTCCTCCCCAAGTGAACATCTTCTAAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 r 40823838 40854826 3 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 645 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW92581	6e-200	100.0	tau tubulin kin...	Homo sapiens
Q6IQ55	7.8e-200	100.0	Tau-tubulin kin...	Homo sapiens
AAH71556	7.8e-200	100.0	TTBK2 protein [...	Homo sapiens
AAO14996	9.6e-200	100.0	tau-tubulin kin...	Homo sapiens
XP_001155158	2.1e-199	99.8	tau tubulin kin...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCATCTCTGTTAAGTGTCCTC

Primer_r
: TTGTGCTTCCCTCGTATCATC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TCATCTCTGTTAAGTGTCCTC
Primer_r	: TTGTGCTTCCCTCGTATCATC
PCR product length	: 133 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1447 bp
Genome contig ID	gi51511731r_40723838
PolyA signal sequence (AATACA,-21)	+--------+--------+----*----+---- TTGCTGCCAAACCTAATACAGTTGAATTGGGAAAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAAGAAAGGAATACATTTCCTCCCCAAGTGAACATCTTCTAAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	r	40823838	40854826	3	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0847

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information