HUGE

Gene/Protein Characteristic Table for KIAA0908

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00680
Accession No. :	AB020715
Description :	Prenylcysteine oxidase precursor.
HUGO Gene Name :	prenylcysteine oxidase 1 (PCYOX1)
Clone Name :	hk10449 [Vector Info]
Flexi ORF Clone :	pF1KSDA0908
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4226 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO
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Features of the protein sequence	Description

Length: 506 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG09897	4.3e-212	100.0	prenylcysteine ...	synthetic construct
Q9UHG3	2.3e-211	99.8	Prenylcysteine ...	Homo sapiens
AAF16937	5.7e-211	99.6	prenylcysteine ...	Homo sapiens
Q5R748	1.6e-208	98.8	Prenylcysteine ...	Pongo abelii
Q95KC9	5.4e-208	98.0	Prenylcysteine ...	Macaca fascicularis

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013027 37 74 PF07992 FAD-dependent pyridine nucleotide-disulphide oxidoreductase

IPR010795 129 506 PF07156 Prenylcysteine lyase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013027	37	74	PF07992	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
IPR010795	129	506	PF07156	Prenylcysteine lyase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 4 RVVAELVSSLLGLWLLLCSCGCP 26 PRIMARY 23

2 36 DKIAIIGAGIGGTSAAYYLR 55 SECONDARY 20

3 130 EESNWFIINVIKLVWRYGFQFLR 152 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	RVVAELVSSLLGLWLLLCSCGCP	26	PRIMARY	23
2	36	DKIAIIGAGIGGTSAAYYLR	55	SECONDARY	20
3	130	EESNWFIINVIKLVWRYGFQFLR	152	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGGAAAGATGTGAAGATAGAC

Primer_r
: TAAAGGATGGATGACAGAACC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGGAAAGATGTGAAGATAGAC
Primer_r	: TAAAGGATGGATGACAGAACC
PCR product length	: 114 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA0908

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information