HUGE

Gene/Protein Characteristic Table for KIAA0920

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00682
Accession No. :	AB023137
Description :	Paralemmin-2.
HUGO Gene Name :	A kinase (PRKA) anchor protein 2 (AKAP2)
Clone Name :	hh02592 [Vector Info]
Flexi ORF Clone :	pF1KSDA0920
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5210 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1706 bp

Genome contig ID gi89161216f_111482398
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AATTTCTGGATGAGAAAATTTTCAATTCTGGCCAG
Flanking genome sequence
(489907 - 489956)
----+----*----+----*----+----*----+----*----+----*
TGAGAAAGAAAAAAAAATAAACAGCCTTCTTTTTTTTTCCTTTGTTTTAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 f 111582398 111972303 11 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1134 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAC38839	100.0	AKAP-2 protein ...	Homo sapiens
XP_001106950	97.0	A kinase (PRKA)...	Macaca mulatta
AAI40819	98.8	PALM2-AKAP2 [Ho...	Homo sapiens
EAW59054	98.8	hCG28765, isofo...	Homo sapiens
EAW59055	82.6	hCG28765, isofo...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CGTTTCTCTCCATATTTGCCC

Primer_r
: AAGCAGACACGATCCTAAAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CGTTTCTCTCCATATTTGCCC
Primer_r	: AAGCAGACACGATCCTAAAGC
PCR product length	: 225 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1706 bp
Genome contig ID	gi89161216f_111482398
PolyA signal sequence (None)	+--------+--------+----*----+---- AATTTCTGGATGAGAAAATTTTCAATTCTGGCCAG
Flanking genome sequence (489907 - 489956)	----+--------+--------+--------+--------+----* TGAGAAAGAAAAAAAAATAAACAGCCTTCTTTTTTTTTCCTTTGTTTTAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	f	111582398	111972303	11	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA0920

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information