HUGE

Gene/Protein Characteristic Table for KIAA0923

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00684
Accession No. :	AB023140
Description :	Afadin- and alpha-actinin-binding protein.
HUGO Gene Name :
Clone Name :	hh02882 [Vector Info]
Flexi ORF Clone :	pF1KSDA0923
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5835 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3726 bp

Genome contig ID gi89161185r_84781978
PolyA signal sequence
(AATACA,-21)
+----*----+----*----+----*----+----
ATTTGTTGATGAGAAATACACTGATGAAACAACAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTTTTTTACTGGAATGAATGGACTATAAGTTTGGGGTTAGAATCCTAAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 84881978 84928816 14 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 626 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001139479	1.4e-212	99.7	synovial sarcom...	Pan troglodytes
Q9Y2D8	2.1e-210	100.0	Afadin- and alp...	Homo sapiens
XP_001139549	1.2e-209	99.7	synovial sarcom...	Pan troglodytes
CAB61373	1.7e-209	99.8	hypothetical pr...	Homo sapiens
AAQ72373	1.7e-209	99.7	synovial sarcom...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AGCACCGTGAATCTAGTCTTG

Primer_r
: AGTAATCACAGCAGGGTCTTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGCACCGTGAATCTAGTCTTG
Primer_r	: AGTAATCACAGCAGGGTCTTG
PCR product length	: 125 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3726 bp
Genome contig ID	gi89161185r_84781978
PolyA signal sequence (AATACA,-21)	+--------+--------+----*----+---- ATTTGTTGATGAGAAATACACTGATGAAACAACAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTTTTTTACTGGAATGAATGGACTATAAGTTTGGGGTTAGAATCCTAAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	84881978	84928816	14	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0923

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information