HUGE

Gene/Protein Characteristic Table for KIAA0954

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04311
Accession No. :	AB023171
Description :	Uncharacterized protein C11orf9 (Fragment).
HUGO Gene Name :
Clone Name :	hj05543s1 [Vector Info]
Flexi ORF Clone :	pF1KA0954
Source :	Human adult brain
Note :	We replaced hj05543, former representative clones for KIAA0954 with hj05543s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 5926 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2374 bp

Genome contig ID gi51511727f_61176697
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
ATATAAATAAATGTATAAATACTGCTTTGTATCTG
Flanking genome sequence
(135870 - 135919)
----+----*----+----*----+----*----+----*----+----*
AGCTTGCCTCCTTGTCTCTTCTTGGGATTGGTCTGGTGGGAGAGGAGTCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 61276697 61312565 27 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1183 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9Y2G1	100.0	Uncharacterized...	Homo sapiens
XP_001116657	98.0	similar to CG33...	Macaca mulatta
XP_540915	91.7	similar to CG33...	Canis lupus fam...
Q3UR85	88.8	Uncharacterized...	Mus musculus
AAF28400	97.2	C11orf9 [Homo s...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007888 425 572 PF05224 NDT80/PhoG like DNA-binding

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007888	425	572	PF05224	NDT80/PhoG like DNA-binding

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 800 TIIALVVVMAFSVVSMSTLYVLS 822 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	800	TIIALVVVMAFSVVSMSTLYVLS	822	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GTTTGTTCCTGTAGTCACTGG

Primer_r
: CACATGACAAATACCAAGCTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2374 bp
Genome contig ID	gi51511727f_61176697
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- ATATAAATAAATGTATAAATACTGCTTTGTATCTG
Flanking genome sequence (135870 - 135919)	----+--------+--------+--------+--------+----* AGCTTGCCTCCTTGTCTCTTCTTGGGATTGGTCTGGTGGGAGAGGAGTCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	61276697	61312565	27	100.0	Perfect prediction

Primer_f	: GTTTGTTCCTGTAGTCACTGG
Primer_r	: CACATGACAAATACCAAGCTC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0954

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information