HUGE

Gene/Protein Characteristic Table for KIAA1024

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00715
Accession No. :	AB028947
Description :
HUGO Gene Name :
Clone Name :	fg00935s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1024
Source :	Human fetal brain
Note :	We replaced fg00935, former representative clones for KIAA1024 with fg00935s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6741 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3915 bp

Genome contig ID gi51511731f_77435493
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TCCAAATATAATCAGAAATAAACCGAAAAAAATAT
Flanking genome sequence
(116206 - 116255)
----+----*----+----*----+----*----+----*----+----*
AAAATGTCTTGCAGTGAGAGTTGATTTTATGCATAAATTATAAGTGTTCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 f 77511913 77551697 4 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 917 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001109121	97.4	hypothetical pr...	Macaca mulatta
EDL20892	89.2	cDNA sequence A...	Mus musculus
XP_001363522	83.4	similar to DD1 ...	Monodelphis dom...
AAU93887	81.3	DD1 protein [Ga...	Gallus gallus
XP_001507379	73.1	similar to DD1 ...	Ornithorhynchus...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR009626 759 917 PF06789 Protein of unknown function UPF0258

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR009626	759	917	PF06789	Protein of unknown function UPF0258

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 891 CKIAALIAAAACTVILVIVVPIC 913 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	891	CKIAALIAAAACTVILVIVVPIC	913	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTGACGCTGAGGTTATGAATC

Primer_r
: ACTCTATCTTGCTCATTCTGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3915 bp
Genome contig ID	gi51511731f_77435493
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TCCAAATATAATCAGAAATAAACCGAAAAAAATAT
Flanking genome sequence (116206 - 116255)	----+--------+--------+--------+--------+----* AAAATGTCTTGCAGTGAGAGTTGATTTTATGCATAAATTATAAGTGTTCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	f	77511913	77551697	4	99.0	Perfect prediction

Primer_f	: CTGACGCTGAGGTTATGAATC
Primer_r	: ACTCTATCTTGCTCATTCTGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1024

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information