HUGE

Gene/Protein Characteristic Table for KIAA1164

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04977
Accession No. :	AB032990
Description :	family with sequence similarity 63, member B (FAM63B), transcript variant 1, mRNA.
HUGO Gene Name :	family with sequence similarity 63, member B (FAM63B)
Clone Name :	hk00541 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4097 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2923 bp

Genome contig ID gi51511731f_56751576
PolyA signal sequence
(AATAGA,-21)
+----*----+----*----+----*----+----
ATGCAAGCCTGGGCAATAGAGCGAGACTCCGTCTC
Flanking genome sequence
(185450 - 185499)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAATTAGAGCTATTGTGTCTTTATTTTCTTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 f 56851576 56937024 9 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 390 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW77546	2.3e-146	100.0	family with seq...	Homo sapiens
XP_510443	1.2e-145	99.7	hypothetical pr...	Pan troglodytes
Q8NBR6	1.2e-145	99.7	Protein FAM63B.	Homo sapiens
BAG59761	2.3e-145	99.5	unnamed protein...	Homo sapiens
XP_001918192	7.9e-143	98.2	similar to Y55F...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037811	2.4e-57	58.3	KIAA1390

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007518 42 167 PF04424 Protein of unknown function DUF544

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007518	42	167	PF04424	Protein of unknown function DUF544

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 35 PCPLLAILNVLLLAWK 50 PRIMARY 16

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	35	PCPLLAILNVLLLAWK	50	PRIMARY	16

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ACAATCTGGGAATAGTGAACG

Primer_r
: TTAGGAAATCAGGCACAGACG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ACAATCTGGGAATAGTGAACG
Primer_r	: TTAGGAAATCAGGCACAGACG
PCR product length	: 194 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2923 bp
Genome contig ID	gi51511731f_56751576
PolyA signal sequence (AATAGA,-21)	+--------+--------+----*----+---- ATGCAAGCCTGGGCAATAGAGCGAGACTCCGTCTC
Flanking genome sequence (185450 - 185499)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAATTAGAGCTATTGTGTCTTTATTTTCTTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	f	56851576	56937024	9	99.3	Perfect prediction

Gene/Protein Characteristic Table for KIAA1164

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information