HUGE

Gene/Protein Characteristic Table for KIAA1217

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00770
Accession No. :	AB033043
Description :	Sickle tail protein homolog.
HUGO Gene Name :
Clone Name :	fh03001s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1217
Source :	Human fetal brain
Note :	We replaced fh03001, former representative clones for KIAA1217 with fh03001s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6127 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1523 bp

Genome contig ID gi89161187f_23923681
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
AAGTAAAGTGGAAATAAAATGTCTTTATCACTTGG
Flanking genome sequence
(953104 - 953153)
----+----*----+----*----+----*----+----*----+----*
CTTTTTTTCTTTTGAGTCCTCAACTTAAAAAATTATTGTTGGCCTAGAGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 f 24023681 24876783 19 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1339 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_001098636	97.8	similar to p130...	Macaca mulatta
XP_001098044	97.8	similar to p130...	Macaca mulatta
AAI58052	85.6	Etl4 protein [M...	Mus musculus
XP_001098739	96.1	similar to p130...	Macaca mulatta
XP_507697	68.2	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB051471	4.2e-18	35.4	KIAA1684

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 2 TALLLHGVFLLLLIFFLEQGK 22 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	2	TALLLHGVFLLLLIFFLEQGK	22	PRIMARY	21

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCCGTCTCACTGAATCAAGGT

Primer_r
: AATGTAACTCCGACTTGTGCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1523 bp
Genome contig ID	gi89161187f_23923681
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- AAGTAAAGTGGAAATAAAATGTCTTTATCACTTGG
Flanking genome sequence (953104 - 953153)	----+--------+--------+--------+--------+----* CTTTTTTTCTTTTGAGTCCTCAACTTAAAAAATTATTGTTGGCCTAGAGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	f	24023681	24876783	19	99.6	Perfect prediction

Primer_f	: TCCGTCTCACTGAATCAAGGT
Primer_r	: AATGTAACTCCGACTTGTGCC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1217

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information