HUGE

Gene/Protein Characteristic Table for KIAA1271

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02026
Accession No. :	AB033097
Description :	Mitochondrial antiviral-signaling protein.
HUGO Gene Name :
Clone Name :	hk06527 [Vector Info]
Flexi ORF Clone :	pF1KA1271
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4187 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2486 bp

Genome contig ID gi51511747f_3683203
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCTCCAGCCTGGGCGACAGAGTGGTATTCTGTTTC
Flanking genome sequence
(114079 - 114128)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAGGCAGTATGTAGCCCCGAAGACTGTTGCCCAAGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 f 3783201 3797280 6 99.2 Terminal No-hit

Features of the protein sequence	Description

Length: 542 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q7Z434	3.8e-155	100.0	Mitochondrial a...	Homo sapiens
AAH44952	2.4e-154	99.4	Virus-induced s...	Homo sapiens
BAC77356	3e-154	99.4	putative NFkB a...	Homo sapiens
XP_525410	1.9e-153	98.9	virus-induced s...	Pan troglodytes
ABG67965	1.5e-138	90.2	virus-induced s...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 516 GALWLQVAVTGVLVVTLLVVLY 537 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	516	GALWLQVAVTGVLVVTLLVVLY	537	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATGGAGGATATAGGGCGTTTC

Primer_r
: AAAGAACCCATAAGGATACCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ATGGAGGATATAGGGCGTTTC
Primer_r	: AAAGAACCCATAAGGATACCC
PCR product length	: 134 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2486 bp
Genome contig ID	gi51511747f_3683203
PolyA signal sequence (None)	+--------+--------+----*----+---- GCTCCAGCCTGGGCGACAGAGTGGTATTCTGTTTC
Flanking genome sequence (114079 - 114128)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAGGCAGTATGTAGCCCCGAAGACTGTTGCCCAAGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	f	3783201	3797280	6	99.2	Terminal No-hit

Gene/Protein Characteristic Table for KIAA1271

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information