HUGE

Gene/Protein Characteristic Table for KIAA1275

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05024
Accession No. :	AB033101
Description :	Filamin-A-interacting protein 1.
HUGO Gene Name :	filamin A interacting protein 1 (FILIP1)
Clone Name :	hk10413 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4051 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 599 bp

Genome contig ID gi89161210r_75974528
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ATGTGAACATGTAATAAAATGGAAATGAAATATGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATCCTAAGAACAGAGTTTTACTTATTTGTGTGTGTCTGTGTGTATTGTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 r 76074528 76129439 4 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1140 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7Z7B0	99.1	Filamin-A-inter...	Homo sapiens
BAF82921	98.9	unnamed protein...	Homo sapiens
CAL38276	98.9	hypothetical pr...	synthetic construct
XP_001144185	98.9	filamin A inter...	Pan troglodytes
XP_001113175	98.5	similar to fila...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037854	1.2e-06	29.8	KIAA1433
AB002376	0.00021	25.0	KIAA0378
AB046781	0.0004	24.5	KIAA1561

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom NULL 148 322 PD023692 NULL

NULL 323 358 PD138041 NULL

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	NULL	148	322	PD023692	NULL
NULL	323	358	PD138041	NULL

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 AQYAIYIVSRLILLHFLLQARED 23 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	AQYAIYIVSRLILLHFLLQARED	23	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AAAGCAGGAAAGCCAGTAGTG

Primer_r
: TTTCACGGCAGCAGTAGCATC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGACTCAATCACACGCTCTTC
Primer_r	: GATGTGAAAGAGGCAAATGAC
PCR product length	: 152 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	599 bp
Genome contig ID	gi89161210r_75974528
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- ATGTGAACATGTAATAAAATGGAAATGAAATATGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATCCTAAGAACAGAGTTTTACTTATTTGTGTGTGTCTGTGTGTATTGTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	r	76074528	76129439	4	100.0	Perfect prediction

Primer_f	: AAAGCAGGAAAGCCAGTAGTG
Primer_r	: TTTCACGGCAGCAGTAGCATC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1275

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information