HUGE

Gene/Protein Characteristic Table for KIAA1289

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04273
Accession No. :	AB033115
Description :	Baculoviral IAP repeat-containing protein 6.
HUGO Gene Name :
Clone Name :	hh15326s2 [Vector Info]
Source :	Human adult brain
Note :	We replaced hh15326, former representative clones for KIAA1289 with hh15326s2. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 9078 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 690 bp

Genome contig ID gi89161199f_32448025
PolyA signal sequence
(AATAAA,-32)
+----*----+----*----+----*----+----
AAAAATAAATGAACATGATTTTATTCTATGCCAAC
Flanking genome sequence
(249143 - 249192)
----+----*----+----*----+----*----+----*----+----*
ATTTGGGCCTCTGAATGTATCTGTTATTTGAATTTAAGTATTTGAAAAGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 32548025 32697166 45 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 2793 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAX00447	99.9	baculoviral IAP...	Homo sapiens
NP_057336	99.9	baculoviral IAP...	Homo sapiens
Q9NR09	99.9	Baculoviral IAP...	Homo sapiens
EAX00445	99.7	baculoviral IAP...	Homo sapiens
EAX00443	99.7	baculoviral IAP...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB051521	2.7e-22	32.0	KIAA1734

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR000608 2558 2645 PD000461 Ubiquitin-conjugating enzyme

HMMPfam IPR000608 2513 2671 PF00179 Ubiquitin-conjugating enzyme

HMMSmart IPR000608 2512 2676 SM00212 Ubiquitin-conjugating enzyme

ProfileScan IPR000608 2512 2640 PS50127 Ubiquitin-conjugating enzyme

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000608	2558	2645	PD000461	Ubiquitin-conjugating enzyme
HMMPfam	IPR000608	2513	2671	PF00179	Ubiquitin-conjugating enzyme
HMMSmart	IPR000608	2512	2676	SM00212	Ubiquitin-conjugating enzyme
ProfileScan	IPR000608	2512	2640	PS50127	Ubiquitin-conjugating enzyme

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 272 VLFLLSMDFTCHADLLLFVCKVL 294 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	272	VLFLLSMDFTCHADLLLFVCKVL	294	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCATCCATACAAGTGCAAGTC

Primer_r
: CTGAAGACCTCCTACATACAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GGGGCTCACTGCTTTTGGTAC
Primer_r	: ACTTGCCATCATTCCTTCTAG
PCR product length	: 154(1.6k) bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	690 bp
Genome contig ID	gi89161199f_32448025
PolyA signal sequence (AATAAA,-32)	+--------+--------+----*----+---- AAAAATAAATGAACATGATTTTATTCTATGCCAAC
Flanking genome sequence (249143 - 249192)	----+--------+--------+--------+--------+----* ATTTGGGCCTCTGAATGTATCTGTTATTTGAATTTAAGTATTTGAAAAGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	32548025	32697166	45	99.9	Perfect prediction

Primer_f	: TCATCCATACAAGTGCAAGTC
Primer_r	: CTGAAGACCTCCTACATACAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1289

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information