HUGE

Gene/Protein Characteristic Table for KIAA1316

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05408
Accession No. :	AB037737
Description :	HEAT repeat containing 5A.
HUGO Gene Name :
Clone Name :	fh12964 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5477 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 703 bp

Genome contig ID gi51511730r_30731838
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACTCCAGCCTGGGCGACAGAGTGAGACTCCATCT
Flanking genome sequence
(99721 - 99672)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAATTCTGCCTTATTCAGTAATTGTATTAAACTTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 r 30831559 30922706 27 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 1590 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH45764	100.0	HEATR5A protein...	Homo sapiens
EAW65948	100.0	hCG41034, isofo...	Homo sapiens
NP_056288	99.9	HEAT repeat con...	Homo sapiens
Q86XA9	99.9	HEAT repeat-con...	Homo sapiens
XP_522993	99.3	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037835	2.7e-158	56.2	KIAA1414

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000357 395 431 PF02985 HEAT

IPR000357 477 514 PF02985 HEAT

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000357	395	431	PF02985	HEAT
IPR000357	477	514	PF02985	HEAT

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 4 HPSISVRLAAAWCLHCIAVALPS 26 PRIMARY 23

2 47 EAVTGFSFAVAALLGAVKHCPLG 69 SECONDARY 23

3 109 ALMTLGPAVVSHHLARVLLLWKC 131 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	HPSISVRLAAAWCLHCIAVALPS	26	PRIMARY	23
2	47	EAVTGFSFAVAALLGAVKHCPLG	69	SECONDARY	23
3	109	ALMTLGPAVVSHHLARVLLLWKC	131	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTCATGCAAATTGGACCTCAG

Primer_r
: TTGACACTTTCCTGATTGCCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTCATGCAAATTGGACCTCAG
Primer_r	: TTGACACTTTCCTGATTGCCC
PCR product length	: 113 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	703 bp
Genome contig ID	gi51511730r_30731838
PolyA signal sequence (None)	+--------+--------+----*----+---- CACTCCAGCCTGGGCGACAGAGTGAGACTCCATCT
Flanking genome sequence (99721 - 99672)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAATTCTGCCTTATTCAGTAATTGTATTAAACTTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	r	30831559	30922706	27	99.7	Perfect prediction

Gene/Protein Characteristic Table for KIAA1316

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information