HUGE

Gene/Protein Characteristic Table for KIAA1347

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04213
Accession No. :	AB037768
Description :	Calcium-transporting ATPase type 2C member 1.
HUGO Gene Name :	ATPase, Ca++ transporting, type 2C, member 1 (ATP2C1)
Clone Name :	fj00739 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4075 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 905 bp

Genome contig ID gi89161205f_131995616
PolyA signal sequence
(TATAAA,-22)
+----*----+----*----+----*----+----
GTCATCCTCTAAATATAAATCCAAATACCTCAGCT
Flanking genome sequence
(208175 - 208224)
----+----*----+----*----+----*----+----*----+----*
AAGTAATTCTATTTTATTATTTTTACTGTTATGTATGTTTTTAATCATAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 132095525 132203789 28 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 918 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
P98194	99.9	Calcium-transpo...	Homo sapiens
AAP30009	99.9	secretory pathw...	Homo sapiens
EAW79220	99.9	ATPase, Ca++ tr...	Homo sapiens
XP_001146321	99.8	calcium-transpo...	Pan troglodytes
XP_516748	99.8	calcium-transpo...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014603	0	66.8	KIAA0703
AB018321	1.4e-27	32.1	KIAA0778
AB058728	1e-07	24.3	KIAA1825

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001757 183 197 PR00119 ATPase

IPR001757 347 361 PR00119 ATPase

IPR000695 509 527 PR00120 H+ transporting ATPase

IPR001757 539 550 PR00119 ATPase

IPR001757 561 571 PR00119 ATPase

IPR000695 613 629 PR00120 H+ transporting ATPase

IPR000695 641 657 PR00120 H+ transporting ATPase

IPR001757 641 660 PR00119 ATPase

IPR001757 665 677 PR00119 ATPase

IPR000695 673 698 PR00120 H+ transporting ATPase

HMMPfam IPR004014 21 98 PF00690 ATPase

IPR008250 104 339 PF00122 E1-E2 ATPase-associated region

IPR005834 343 664 PF00702 Haloacid dehalogenase-like hydrolase

IPR006068 760 901 PF00689 ATPase

HMMTigr IPR006413 22 902 TIGR01522 Calcium-transporting P-type ATPase

IPR001757 104 208 TIGR01494 ATPase

IPR001757 254 366 TIGR01494 ATPase

IPR001757 509 586 TIGR01494 ATPase

IPR001757 613 734 TIGR01494 ATPase

ScanRegExp IPR001757 349 355 PS00154 ATPase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	183	197	PR00119	ATPase
IPR001757	347	361	PR00119	ATPase
IPR000695	509	527	PR00120	H+ transporting ATPase
IPR001757	539	550	PR00119	ATPase
IPR001757	561	571	PR00119	ATPase
IPR000695	613	629	PR00120	H+ transporting ATPase
IPR000695	641	657	PR00120	H+ transporting ATPase
IPR001757	641	660	PR00119	ATPase
IPR001757	665	677	PR00119	ATPase
IPR000695	673	698	PR00120	H+ transporting ATPase
HMMPfam	IPR004014	21	98	PF00690	ATPase
IPR008250	104	339	PF00122	E1-E2 ATPase-associated region
IPR005834	343	664	PF00702	Haloacid dehalogenase-like hydrolase
IPR006068	760	901	PF00689	ATPase
HMMTigr	IPR006413	22	902	TIGR01522	Calcium-transporting P-type ATPase
IPR001757	104	208	TIGR01494	ATPase
IPR001757	254	366	TIGR01494	ATPase
IPR001757	509	586	TIGR01494	ATPase
IPR001757	613	734	TIGR01494	ATPase
ScanRegExp	IPR001757	349	355	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 75 ISQFKNPLIMLLLASAVISVLMH 97 PRIMARY 23

2 101 DAVSITVAILIVVTVAFVQEYRS 123 PRIMARY 23

3 267 QLSFYSFGIIGIIMLVGWLLGKD 289 PRIMARY 23

4 297 SVSLAVAAIPEGLPIVVTVTLAL 319 PRIMARY 23

5 772 KNLILKILVSSIIIVCGTLFVFW 794 PRIMARY 23

6 842 MFCYAVLGSIMGQLLVIYFPPLQ 864 PRIMARY 23

7 871 SLSILDLLFLLGLTSSVCIVAEI 893 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	75	ISQFKNPLIMLLLASAVISVLMH	97	PRIMARY	23
2	101	DAVSITVAILIVVTVAFVQEYRS	123	PRIMARY	23
3	267	QLSFYSFGIIGIIMLVGWLLGKD	289	PRIMARY	23
4	297	SVSLAVAAIPEGLPIVVTVTLAL	319	PRIMARY	23
5	772	KNLILKILVSSIIIVCGTLFVFW	794	PRIMARY	23
6	842	MFCYAVLGSIMGQLLVIYFPPLQ	864	PRIMARY	23
7	871	SLSILDLLFLLGLTSSVCIVAEI	893	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTGCCTTTATGGGAACACTGG

Primer_r
: AACCAGCCAACCAACATGATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGTGGATGGCTGTTAAGTGTG
Primer_r	: TCTGCCCTTTGCTCTGGTATG
PCR product length	: 120(300) bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	905 bp
Genome contig ID	gi89161205f_131995616
PolyA signal sequence (TATAAA,-22)	+--------+--------+----*----+---- GTCATCCTCTAAATATAAATCCAAATACCTCAGCT
Flanking genome sequence (208175 - 208224)	----+--------+--------+--------+--------+----* AAGTAATTCTATTTTATTATTTTTACTGTTATGTATGTTTTTAATCATAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	132095525	132203789	28	100.0	Perfect prediction

Primer_f	: TTGCCTTTATGGGAACACTGG
Primer_r	: AACCAGCCAACCAACATGATG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1347

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information