HUGE

Gene/Protein Characteristic Table for KIAA1382

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00818
Accession No. :	AB037803
Description :	solute carrier family 38, member 2.
HUGO Gene Name :	solute carrier family 38, member 2 (SLC38A2)
Clone Name :	fj05641s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1382
Source :	Human fetal brain
Note :	We replaced fj05641, former representative clones for KIAA1382 with fj05641s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4444 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2923 bp

Genome contig ID gi89161190r_44938239
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTAACTGAACTAAAATAAATACATGCTTAATCCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTAGCAGTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCAGGTAATGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 45038239 45051343 15 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 506 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAF84333	2.7e-196	99.8	unnamed protein...	Homo sapiens
A1YG32	3.1e-196	99.8	Sodium-coupled ...	Pan paniscus
CAC51434	4.1e-196	99.8	putative 40-9-1...	Homo sapiens
XP_001095418	2.3e-192	96.8	similar to solu...	Macaca mulatta
XP_543722	2e-183	92.5	similar to solu...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013057 69 495 PF01490 Amino acid transporter

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013057	69	495	PF01490	Amino acid transporter

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 72 SFGMSVFNLSNAIVGSGILGLSY 94 SECONDARY 23

2 101 IALFIILLTFVSIFSLYSVHLLL 123 PRIMARY 23

3 161 AMSSYLFIVKYELPLVIQALTNI 183 SECONDARY 23

4 192 LNGNYLVLLVSLVVILPLSLFRN 214 PRIMARY 23

5 217 YLGYTSGLSLLCMVFFLIVVIC 238 PRIMARY 22

6 293 VYAVPILIFSFVCHPAVLPIYEE 315 PRIMARY 23

7 327 VSKISFFAMFLMYLLAALFGYLT 349 PRIMARY 23

8 360 HTYSSILGTDILLLIVRLAVLMA 382 PRIMARY 23

9 386 TVPVVIFPIRSSVTHLLCASKD 407 SECONDARY 22

10 411 WRHSLITVSILAFTNLLVIFVPT 433 PRIMARY 23

11 439 GFIGASAASMLIFILPSAFYIKL 461 PRIMARY 23

12 474 GALFFLLSGVLVMTGSMALIVLD 496 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	72	SFGMSVFNLSNAIVGSGILGLSY	94	SECONDARY	23
2	101	IALFIILLTFVSIFSLYSVHLLL	123	PRIMARY	23
3	161	AMSSYLFIVKYELPLVIQALTNI	183	SECONDARY	23
4	192	LNGNYLVLLVSLVVILPLSLFRN	214	PRIMARY	23
5	217	YLGYTSGLSLLCMVFFLIVVIC	238	PRIMARY	22
6	293	VYAVPILIFSFVCHPAVLPIYEE	315	PRIMARY	23
7	327	VSKISFFAMFLMYLLAALFGYLT	349	PRIMARY	23
8	360	HTYSSILGTDILLLIVRLAVLMA	382	PRIMARY	23
9	386	TVPVVIFPIRSSVTHLLCASKD	407	SECONDARY	22
10	411	WRHSLITVSILAFTNLLVIFVPT	433	PRIMARY	23
11	439	GFIGASAASMLIFILPSAFYIKL	461	PRIMARY	23
12	474	GALFFLLSGVLVMTGSMALIVLD	496	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCCGTGGATGTTTCAGTTAC

Primer_r
: AACCCAAGACCCAAACCTGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2923 bp
Genome contig ID	gi89161190r_44938239
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TTAACTGAACTAAAATAAATACATGCTTAATCCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTAGCAGTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCAGGTAATGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	45038239	45051343	15	99.3	Perfect prediction

Primer_f	: TTCCGTGGATGTTTCAGTTAC
Primer_r	: AACCCAAGACCCAAACCTGAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1382

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information