HUGE

Gene/Protein Characteristic Table for KIAA1394

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00824
Accession No. :	AB037815
Description :
HUGO Gene Name :	ATP-grasp domain containing 1 (ATPGD1)
Clone Name :	hj07546 [Vector Info]
Flexi ORF Clone :	pF1KSDA1394
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5065 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1004 bp

Genome contig ID gi51511727f_66840243
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
GCATCCCTCCCCAAATAAAGGCTTATGTACTGGTG
Flanking genome sequence
(109411 - 109460)
----+----*----+----*----+----*----+----*----+----*
AAGTGTCTAGATAGGTTCTCTTGACTGGACAACTCCTCCCAGGATCAGCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 66940243 66949652 8 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1003 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
NP_065862	100.0	ATP-grasp domai...	Homo sapiens
A5YM72	99.9	ATP-grasp domai...	Homo sapiens
EDL33027	83.0	mCG3875 [Mus mu...	Mus musculus
XP_001378878	75.6	similar to hCG2...	Monodelphis dom...
Q6ZPS2	84.0	ATP-grasp domai...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003806 677 873 PF02655 ATP-grasp fold

ProfileScan IPR011761 692 896 PS50975 ATP-grasp fold

ScanRegExp IPR005479 863 870 PS00867 Carbamoyl-phosphate synthase L chain

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003806	677	873	PF02655	ATP-grasp fold
ProfileScan	IPR011761	692	896	PS50975	ATP-grasp fold
ScanRegExp	IPR005479	863	870	PS00867	Carbamoyl-phosphate synthase L chain

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 881 ELYGVDLLLAAVMVACGLRPALP 903 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	881	ELYGVDLLLAAVMVACGLRPALP	903	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GCTCCAGGATTATACCACAGT

Primer_r
: TCTGCCAATGCTAGTTAGGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1004 bp
Genome contig ID	gi51511727f_66840243
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- GCATCCCTCCCCAAATAAAGGCTTATGTACTGGTG
Flanking genome sequence (109411 - 109460)	----+--------+--------+--------+--------+----* AAGTGTCTAGATAGGTTCTCTTGACTGGACAACTCCTCCCAGGATCAGCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	66940243	66949652	8	100.0	Perfect prediction

Primer_f	: GCTCCAGGATTATACCACAGT
Primer_r	: TCTGCCAATGCTAGTTAGGTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1394

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information