HUGE

Gene/Protein Characteristic Table for KIAA1524

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :
Accession No. :	AB040957
Description :	p90 autoantigen.
HUGO Gene Name :
Clone Name :	fj00637 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3848 bp
Physical map
Restriction map
The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
Comparison between the cloned and the revised DNA sequences.
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. revised DNA seq.
Warning for N-terminal truncation:
NO NO

Warning for coding interruption:
NO NO

Integrity of 3' end

Length of 3'UTR 1164 bp

Genome contig ID gi89161205r_109651523
PolyA signal sequence
(AGTAAA,-21)
+----*----+----*----+----*----+----
AAAATATTATGCAGAGTAAAACATTTTAAATTACT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTTGTTCTATAGAGGAGATACATTCTGTTTCTCTTTTGAAATTGCATGC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 109751523 109787300 21 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 884 aa
This protein sequence is predicted from the revised DNA sequence

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAL11632	99.8	p90 autoantigen...	Homo sapiens
CAD28489	99.4	hypothetical pr...	Homo sapiens
XP_001151616	99.3	p90 autoantigen...	Pan troglodytes
XP_001101310	98.7	similar to p90 ...	Macaca mulatta
XP_535731	90.6	similar to p90 ...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 171 TLITLLAHSSLTVVVFALSILSS 193 PRIMARY 23

2 273 DSSSKVLELLLAFCSVTQLRHML 295 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	171	TLITLLAHSSLTVVVFALSILSS	193	PRIMARY	23
2	273	DSSSKVLELLLAFCSVTQLRHML	295	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGTTGCATAGTGGTCCAGATC

Primer_r
: TGAAAAGTACAGAAGGACCCT

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGTTGCATAGTGGTCCAGATC
Primer_r	: TGAAAAGTACAGAAGGACCCT
PCR product length	: 237 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.	revised DNA seq.
Warning for N-terminal truncation:	NO	NO
Warning for coding interruption:	NO	NO

Length of 3'UTR	1164 bp
Genome contig ID	gi89161205r_109651523
PolyA signal sequence (AGTAAA,-21)	+--------+--------+----*----+---- AAAATATTATGCAGAGTAAAACATTTTAAATTACT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTTGTTCTATAGAGGAGATACATTCTGTTTCTCTTTTGAAATTGCATGC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	109751523	109787300	21	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA1524

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information