HUGE

Gene/Protein Characteristic Table for KIAA1546

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05674
Accession No. :	AB046766
Description :
HUGO Gene Name :
Clone Name :	fh12289 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5351 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3295 bp

Genome contig ID gi89161207f_106302364
PolyA signal sequence
(AATAAA,-30)
+----*----+----*----+----*----+----
TTTTTAATAAAATTTATATTTATTTAATGCACTCT
Flanking genome sequence
(118045 - 118094)
----+----*----+----*----+----*----+----*----+----*
AAGTGTTGTCTTCCTGAAGTTTTTTTAGTGCTTGAATGACTGCCACCTCA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 f 106402364 106420407 4 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 684 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAX06179	100.0	hCG21336 [Homo ...	Homo sapiens
AAI10511	99.9	TET2 protein [H...	Homo sapiens
NP_001120680	100.0	tet oncogene fa...	Homo sapiens
Q6N021	99.9	Protein TET2.	Homo sapiens
XP_526645	99.3	hypothetical pr...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB051463	2e-17	35.1	KIAA1676
AB007861	9.1e-05	45.0	KIAA0401

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCCTTTTGTTGGTTACCTCAC

Primer_r
: GAGCCAGTGAAAATTAAGTGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3295 bp
Genome contig ID	gi89161207f_106302364
PolyA signal sequence (AATAAA,-30)	+--------+--------+----*----+---- TTTTTAATAAAATTTATATTTATTTAATGCACTCT
Flanking genome sequence (118045 - 118094)	----+--------+--------+--------+--------+----* AAGTGTTGTCTTCCTGAAGTTTTTTTAGTGCTTGAATGACTGCCACCTCA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	f	106402364	106420407	4	99.1	Perfect prediction

Primer_f	: CCCTTTTGTTGGTTACCTCAC
Primer_r	: GAGCCAGTGAAAATTAAGTGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1546

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information