HUGE

Gene/Protein Characteristic Table for KIAA1676

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04691
Accession No. :	AB051463
Description :	CXXC-type zinc finger protein 6.
HUGO Gene Name :	tet oncogene 1 (TET1)
Clone Name :	fh07095 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4834 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2626 bp

Genome contig ID gi89161187f_69976696
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
AGGAAATAAATTTGTTTGAAATGACATTTTCTCTC
Flanking genome sequence
(147550 - 147599)
----+----*----+----*----+----*----+----*----+----*
ATAAAACTGGTCATCTAACATTATTTCTACCCCTCTATTATGTTTTACTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 f 70076696 70124244 10 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 735 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8NFU7	100.0	Protein TET1; T...	Homo sapiens
AAM88301	100.0	leukemia-associ...	Homo sapiens
EAW54299	100.0	CXXC finger 6 [...	Homo sapiens
XP_507822	99.5	CXXC finger 6 [...	Pan troglodytes
XP_536371	89.0	similar to CXXC...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB046766	6.9e-20	35.0	KIAA1546

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 105 TGHHCPTAVMVVLIMVWDGIPLP 127 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	105	TGHHCPTAVMVVLIMVWDGIPLP	127	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGACGCTTGTTGCAGTTTACC

Primer_r
: AAATCACAGGGCAGAGAATGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTAATACGGAAATCGCTGTGG
Primer_r	: TAACCTCCAAATCGGCTTCTC
PCR product length	: 169 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2626 bp
Genome contig ID	gi89161187f_69976696
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- AGGAAATAAATTTGTTTGAAATGACATTTTCTCTC
Flanking genome sequence (147550 - 147599)	----+--------+--------+--------+--------+----* ATAAAACTGGTCATCTAACATTATTTCTACCCCTCTATTATGTTTTACTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	f	70076696	70124244	10	99.4	Perfect prediction

Primer_f	: TGACGCTTGTTGCAGTTTACC
Primer_r	: AAATCACAGGGCAGAGAATGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1676

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information