HUGE

Gene/Protein Characteristic Table for KIAA1560

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05326
Accession No. :	AB046780
Description :	Glycerol-3-phosphate acyltransferase, mitochondrial precursor.
HUGO Gene Name :	glycerol-3-phosphate acyltransferase, mitochondrial (GPAM)
Clone Name :	fh19959 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5674 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3685 bp

Genome contig ID gi89161187r_113799614
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TGTAGTTTTGTTTTAATAAACCAAAAATTGAACAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTCTTGATGTGTTTGATTTGTATTTAAAACAGTTTCCTACATAATTCAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 r 113899614 113923508 16 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 662 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH30783	100.0	Glycerol-3-phos...	Homo sapiens
BAD18772	99.8	unnamed protein...	Homo sapiens
XP_001145374	99.8	mitochondrial g...	Pan troglodytes
CAD89932	99.7	hypothetical pr...	Homo sapiens
CAD89967	99.7	hypothetical pr...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002123 39 189 PF01553 Phospholipid/glycerol acyltransferase

HMMSmart IPR002123 58 191 SM00563 Phospholipid/glycerol acyltransferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002123	39	189	PF01553	Phospholipid/glycerol acyltransferase
HMMSmart	IPR002123	58	191	SM00563	Phospholipid/glycerol acyltransferase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 9 QEMVATVSPAMIRLTGWVLLKLF 31 SECONDARY 23

2 408 NGVLHVFIMEAIIACSLYAVLN 429 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	9	QEMVATVSPAMIRLTGWVLLKLF	31	SECONDARY	23
2	408	NGVLHVFIMEAIIACSLYAVLN	429	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGAGCACCAGCAGTTTATCAC

Primer_r
: TGTGGCACTCTCAGCATATAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3685 bp
Genome contig ID	gi89161187r_113799614
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TGTAGTTTTGTTTTAATAAACCAAAAATTGAACAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTCTTGATGTGTTTGATTTGTATTTAAAACAGTTTCCTACATAATTCAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	r	113899614	113923508	16	99.3	Perfect prediction

Primer_f	: GGAGCACCAGCAGTTTATCAC
Primer_r	: TGTGGCACTCTCAGCATATAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1560

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information