HUGE

Gene/Protein Characteristic Table for KIAA1598

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05677
Accession No. :	AB046818
Description :	Shootin1.
HUGO Gene Name :
Clone Name :	fj09914 [Vector Info]
Flexi ORF Clone :	pF1KA1598
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3099 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1758 bp

Genome contig ID gi89161187r_118534298
PolyA signal sequence
(ATTAAA,-28)
+----*----+----*----+----*----+----
ACAACTTATTAAAAAGGCACCAATAGTTTCCCATT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGGGTCAGTTGTGGTTATTATTAACGTTTCTGGTTTAGTTCCCCAAGCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 r 118634298 118754550 15 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 446 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAH18259	3e-106	99.6	hypothetical pr...	Homo sapiens
A0MZ66	4.7e-106	99.3	Shootin-1.	Homo sapiens
CAH91407	9.4e-106	98.7	hypothetical pr...	Pongo abelii
XP_521613	1.4e-104	99.1	hypothetical pr...	Pan troglodytes
XP_001494761	3.7e-102	96.0	similar to Shoo...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTTGACTGTTTCCATGTTCTC

Primer_r
: GAGGAGAGTTCAAATTACAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1758 bp
Genome contig ID	gi89161187r_118534298
PolyA signal sequence (ATTAAA,-28)	+--------+--------+----*----+---- ACAACTTATTAAAAAGGCACCAATAGTTTCCCATT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGGGTCAGTTGTGGTTATTATTAACGTTTCTGGTTTAGTTCCCCAAGCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	r	118634298	118754550	15	100.0	Perfect prediction

Primer_f	: CTTGACTGTTTCCATGTTCTC
Primer_r	: GAGGAGAGTTCAAATTACAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1598

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information